View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13706_high_11 (Length: 444)
Name: NF13706_high_11
Description: NF13706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13706_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 10 - 430
Target Start/End: Original strand, 47889327 - 47889756
Alignment:
| Q |
10 |
gcagagacattagcagatcttctcacaagatcaattagnnnnnnngaaaataaattactaatttgacgacaatgattaatcactactccaaagtatgaca |
109 |
Q |
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| T |
47889327 |
gcagaaacattggcagatcttctcacatgatcaattagaaaaaaagaaaataaattactaatttgacgacaatcattaatcactactccaaagtatgaca |
47889426 |
T |
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| Q |
110 |
aatcattagaagtggcctttaaaacttgggcaatgtttagggagtctccctcaattaccacataacgtacacctaaaacaaagctctgataatccctgac |
209 |
Q |
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| T |
47889427 |
aatcattagaagtggcctttaaaacttgggcaatgtttagggagtctccctcaattaccacagaacgtacacctaaaacaaagctctgataatccctgac |
47889526 |
T |
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| Q |
210 |
gaaatatccaataccccataaat--tactttcagggtcggcaacatccacattgatcttaaatcaagtattagga----gaa--ggggaccaagtagagt |
301 |
Q |
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| T |
47889527 |
gaaatatccaataccccataaattatactttcagggtcggcaacatccacattgatcttaaatcaagtattaggagtgtgaactgagggtgcattagaat |
47889626 |
T |
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| Q |
302 |
-gtgcaccatttgagtgttaagcatcttgttgtgttcatctatgatatttcaatctttacacacaattgctgctccaacacgttctactccaatggctct |
400 |
Q |
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| T |
47889627 |
ccatcaccacttgagtgttaagcaccttgttgtgttcatctatgatatttcaagctttacacacaattgctgctccaacacgttctactccaatggctct |
47889726 |
T |
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| Q |
401 |
ccaatcaattcaagttaaaaccattatcta |
430 |
Q |
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| T |
47889727 |
ccaatcaattcaagttaaaaccattatcta |
47889756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 371 - 430
Target Start/End: Original strand, 47888014 - 47888073
Alignment:
| Q |
371 |
tgctccaacacgttctactccaatggctctccaatcaattcaagttaaaaccattatcta |
430 |
Q |
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| T |
47888014 |
tgctccaacacgttcaactccaatggctctccaatcaattcaggttaagactattatcta |
47888073 |
T |
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