View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13706_high_14 (Length: 416)

Name: NF13706_high_14
Description: NF13706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13706_high_14
NF13706_high_14
[»] chr5 (5 HSPs)
chr5 (3-143)||(10520559-10520699)
chr5 (1-145)||(35803109-35803253)
chr5 (1-115)||(35854083-35854203)
chr5 (327-398)||(35803411-35803483)
chr5 (110-145)||(35851949-35851984)
[»] chr4 (6 HSPs)
chr4 (103-145)||(45862515-45862557)
chr4 (68-145)||(47292731-47292808)
chr4 (20-145)||(56209299-56209425)
chr4 (49-101)||(45862385-45862437)
chr4 (19-85)||(45881915-45881981)
chr4 (103-145)||(45882075-45882117)
[»] chr8 (1 HSPs)
chr8 (64-140)||(7962514-7962590)
[»] chr2 (2 HSPs)
chr2 (1-97)||(24351088-24351184)
chr2 (111-151)||(24350959-24350999)


Alignment Details
Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 3 - 143
Target Start/End: Complemental strand, 10520699 - 10520559
Alignment:
Q  3 atcattatgcactaaacttgatatgaaaccctcattttttagtttatctacttgataaacaccttcatttacgaagttttcaacttcttctcttctcttc 102  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  10520699 atcatcatgcactaaacttgatatgaaaccctcattttttagtttatctacttgatagacaccttcatttatgaagttttcaacttcttctcttctcttc 10520600  T
Q  103 cctctagaagaagagactttatccagccaatttgaatagat 143  Q
    ||||||  | ||||| |||| ||||||||||||||| ||||    
T  10520599 cctctaagataagagtctttctccagccaatttgaacagat 10520559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 35803109 - 35803253
Alignment:
Q  1 tcatcattatgcactaaacttgatatgaaaccctcattttttagtttatctacttgataaacaccttcatttacgaagttttcaacttcttctcttctct 100  Q
    ||||||| || |||||| ||||||||||||||||| | ||| |||||||||| | |||||||||||||||||| |||||||| ||||||||||||| |||    
T  35803109 tcatcatcatacactaagcttgatatgaaaccctcttctttcagtttatctaatcgataaacaccttcatttatgaagttttgaacttcttctcttttct 35803208  T
Q  101 tccctctagaagaagagactttatccagccaatttgaatagatat 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  35803209 tccctctagaagaagagactttatccagccaatttgaatagatat 35803253  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 35854203 - 35854083
Alignment:
Q  1 tcatcattatgcactaaacttgatatgaaaccctcattttttagtttatctacttgataaaca------ccttcatttacgaagttttcaacttcttctc 94  Q
    ||||||| || |||||| ||||||||||||||||| | ||| |||||||||| | ||||||||      |||||||||| ||||| || |||||||||||    
T  35854203 tcatcatcatacactaagcttgatatgaaaccctcttctttcagtttatctaatcgataaacagaaacaccttcatttatgaagtcttgaacttcttctc 35854104  T
Q  95 ttctcttccctctagaagaag 115  Q
    || |||||||| |||||||||    
T  35854103 ttttcttccctatagaagaag 35854083  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 398
Target Start/End: Original strand, 35803411 - 35803483
Alignment:
Q  327 aggtccaaaaatttcatcacatgcacaggcaata-taatattcttttggtagaattgtagggacgtaagccac 398  Q
    |||| ||||||| ||||||||||| |||||||   ||||||||||||||| |||||| |||||| ||||||||    
T  35803411 aggtgcaaaaatctcatcacatgcgcaggcaaaggtaatattcttttggttgaattgaagggacataagccac 35803483  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 145
Target Start/End: Complemental strand, 35851984 - 35851949
Alignment:
Q  110 aagaagagactttatccagccaatttgaatagatat 145  Q
    |||||||||||||| |||||||||||||||||||||    
T  35851984 aagaagagactttaaccagccaatttgaatagatat 35851949  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 103 - 145
Target Start/End: Original strand, 45862515 - 45862557
Alignment:
Q  103 cctctagaagaagagactttatccagccaatttgaatagatat 145  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  45862515 cctctagaagaagagactttatccagccaatttgaatagatat 45862557  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 145
Target Start/End: Complemental strand, 47292808 - 47292731
Alignment:
Q  68 catttacgaagttttcaacttcttctcttctcttccctctagaagaagagactttatccagccaatttgaatagatat 145  Q
    |||||| |||||||||||  |||||||||||||| | | |||||||||| || |||||||||||||||||||| ||||    
T  47292808 catttatgaagttttcaatatcttctcttctctttcttgtagaagaagataccttatccagccaatttgaataaatat 47292731  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 56209299 - 56209425
Alignment:
Q  20 ttgatatgaaaccctcattttttagtttatctacttgataaacaccttcatttacgaagttttcaacttctt-ctcttctcttccctctagaagaagaga 118  Q
    |||||||||||||||| | ||  ||| ||| | ||||||| ||||| ||||||| ||| || ||||  |||| || || |||| ||||| | ||||||||    
T  56209299 ttgatatgaaaccctcttcttccagtctatttgcttgatagacaccatcatttatgaaattgtcaatatctttctattttctttcctcttgcagaagaga 56209398  T
Q  119 ctttatccagccaatttgaatagatat 145  Q
    ||||||| |||||||||||||||||||    
T  56209399 ctttatcgagccaatttgaatagatat 56209425  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 45862385 - 45862437
Alignment:
Q  49 tctacttgataaacaccttcatttacgaagttttcaacttcttctcttctctt 101  Q
    ||||||||||| ||||||||||||| |||||| ||||| ||||||||| ||||    
T  45862385 tctacttgatagacaccttcatttatgaagttctcaacatcttctcttttctt 45862437  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 45881915 - 45881981
Alignment:
Q  19 cttgatatgaaaccctcattttttagtttatctacttgataaacaccttcatttacgaagttttcaa 85  Q
    |||| |||||||||||| | ||| ||| | ||||||||||| ||||||||||||| |||||| ||||    
T  45881915 cttgttatgaaaccctcttctttcagtctgtctacttgatagacaccttcatttatgaagttctcaa 45881981  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 145
Target Start/End: Original strand, 45882075 - 45882117
Alignment:
Q  103 cctctagaagaagagactttatccagccaatttgaatagatat 145  Q
    |||||||  ||||| ||||||||||||||||||||||||||||    
T  45882075 cctctagcggaagatactttatccagccaatttgaatagatat 45882117  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 7962514 - 7962590
Alignment:
Q  64 ccttcatttacgaagttttcaacttcttctcttctcttccctctagaagaagagactttatccagccaatttgaata 140  Q
    |||||||||| ||| |||||||  |||||| || |||| ||  ||||||||||||| ||||||||||||||||||||    
T  7962514 ccttcatttatgaaattttcaatatcttcttttttctttccaatagaagaagagaccttatccagccaatttgaata 7962590  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 24351184 - 24351088
Alignment:
Q  1 tcatcattatgcactaaacttgatatgaaaccctcattttttagtttatctacttgataaacaccttcatttacgaagttttcaacttcttctcttc 97  Q
    ||||||| || || |||| ||||||| |  ||||| | ||| || ||||| |||||||||||||||||||||| |||||| ||||  ||||||||||    
T  24351184 tcatcatcatacattaaatttgatataaggccctcttctttcagcttatcaacttgataaacaccttcatttatgaagttctcaatatcttctcttc 24351088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 24350999 - 24350959
Alignment:
Q  111 agaagagactttatccagccaatttgaatagatataatcta 151  Q
    ||||||||||||||||||||| |||| |||||||| |||||    
T  24350999 agaagagactttatccagccagtttgtatagatattatcta 24350959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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