View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13706_high_16 (Length: 400)
Name: NF13706_high_16
Description: NF13706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13706_high_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 11 - 384
Target Start/End: Original strand, 40454388 - 40454761
Alignment:
| Q |
11 |
gatgaaccgttaccatagtaaacctaaagaggttgatcagattgaagatcaaaatgaacacaccaatgaatttagcgatgttgtgaagcacaatgaagac |
110 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
40454388 |
gatgaaccgttaccatagtaaacataaagaggttgatcagattgaagatcaaaatgaacacaccaatgagtttagtgatgttgtgaagcacaatgaagac |
40454487 |
T |
|
| Q |
111 |
aatgagagtgatgatgaagacaccaaggttgatgctaagctcaagaaacatacaagacgaaaacagagaaagaaatatagaaacctacgaaggataactt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40454488 |
aatgagagtgatgatgaagacaccaaggttgatgctaagctcaagaaacataaaagacgaaaacagagaaagaaatatagaaacctacgaaggataactt |
40454587 |
T |
|
| Q |
211 |
taactttgctgtgagttacggttggacattaaaatagttttggatgggacaaatgtggtaaaaacagagatttaaaatccgactgtttcacccgaataga |
310 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40454588 |
taactttgttgtgagttacggttagacattaaaatagttttggaagggacaaatgtggtaaaaacagagatttaaaatctgactgtttcacccgaataga |
40454687 |
T |
|
| Q |
311 |
agtcgctttatacaagttatatcttaatacttgtattgaccttgattaagtataagaatgatgtaacacttatt |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40454688 |
agtcgctttatacaagttatatcttaatacttgtattgaccttgattaagtataagaatggtgtaacacttatt |
40454761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University