View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13706_high_26 (Length: 294)

Name: NF13706_high_26
Description: NF13706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13706_high_26
NF13706_high_26
[»] chr8 (3 HSPs)
chr8 (19-281)||(9692345-9692608)
chr8 (19-284)||(9675323-9675589)
chr8 (145-213)||(21463943-21464011)
[»] chr4 (3 HSPs)
chr4 (22-282)||(35162672-35162933)
chr4 (22-273)||(35155661-35155913)
chr4 (139-282)||(15556246-15556390)
[»] chr3 (24 HSPs)
chr3 (139-284)||(46236538-46236687)
chr3 (131-282)||(47397047-47397199)
chr3 (136-214)||(46480093-46480171)
chr3 (139-263)||(16025737-16025862)
chr3 (137-282)||(46544706-46544852)
chr3 (139-273)||(5156488-5156626)
chr3 (139-282)||(46526169-46526316)
chr3 (134-214)||(46498251-46498331)
chr3 (18-96)||(46236404-46236482)
chr3 (126-282)||(5160508-5160668)
chr3 (139-282)||(45883483-45883624)
chr3 (136-201)||(4581132-4581197)
chr3 (136-201)||(4613589-4613654)
chr3 (139-208)||(46548750-46548819)
chr3 (29-97)||(47413821-47413889)
chr3 (137-213)||(47413941-47414017)
chr3 (138-197)||(46484360-46484419)
chr3 (134-191)||(46491029-46491086)
chr3 (139-200)||(46532224-46532285)
chr3 (233-282)||(46554026-46554075)
chr3 (138-280)||(46539233-46539376)
chr3 (54-100)||(5156671-5156717)
chr3 (139-197)||(46474243-46474301)
chr3 (159-201)||(53390988-53391030)
[»] chr2 (3 HSPs)
chr2 (126-280)||(20144865-20145020)
chr2 (126-280)||(20168754-20168909)
chr2 (172-280)||(20359375-20359484)
[»] chr7 (5 HSPs)
chr7 (154-274)||(17708515-17708636)
chr7 (137-236)||(17699445-17699544)
chr7 (169-236)||(17736208-17736275)
chr7 (154-236)||(16722431-16722513)
chr7 (137-274)||(17718339-17718477)


Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 9692345 - 9692608
Alignment:
Q  19 acctgtccggcaaagatgatcgtttgggtcgaatcttctctaattagaaatagaaaagggtgatcggctataaagtctattccagttggcatacacatgg 118  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9692345 acctgtccggcaaagatgatcgtttgggtcaaatcttctctaattagaaataggaaagggtgatcggctataaagtctattccagttggcatacacatgg 9692444  T
Q  119 ccaccactgcaacactggccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttc 218  Q
    |||||||||||| | |||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9692445 ccaccactgcaatattggccttagcagcttcagtgccttcctcgtttacttcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttc 9692544  T
Q  219 aagagagtccacca-ttttgttaaacctccagaagagaaaggtaaactcactcctaactccttc 281  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9692545 aagagagtccaccatttttgtcaaacctccagaagagaaaggtaaactcactcctaactccttc 9692608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 284
Target Start/End: Original strand, 9675323 - 9675589
Alignment:
Q  19 acctgtccggcaaagatgatcgtttgggtcgaatcttctctaattagaaatagaaaagggtgatcggctataaagtctattccagttggcatacacatgg 118  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||| |     
T  9675323 acctgtccggcaaagatgattgtttgggtcgaatcttctctaattagaaataggaaagggtgatcggctataaagtctattccagttggcgcacacaaga 9675422  T
Q  119 ccaccactgcaacactggccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttc 218  Q
    || | | |  | || |||| | ||||||||||||||||||||| ||||| ||||||  ||||||||||||||||||||||||||||| ||||||||||||    
T  9675423 cccctattttagcattggctgtagcagcttcagtgccttcctcatttacttcaatggtagacttgtgaaatatgttggaaacagaaaagtcttgaccttc 9675522  T
Q  219 aagagagtccacca-ttttgttaaacctccagaagagaaaggtaaactcactcctaactccttcatc 284  Q
    |||||||||||||| |||||| |||||||||||||||||||||||| ||||||||| ||||||||||    
T  9675523 aagagagtccaccatttttgtcaaacctccagaagagaaaggtaaaatcactcctagctccttcatc 9675589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 21463943 - 21464011
Alignment:
Q  145 gcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttga 213  Q
    ||||| || ||||| |||||||| ||||| ||||||||||||||||||||||| ||| |||||| ||||    
T  21463943 gcttcggtaccttcttcgtttacttcaataaaagacttgtgaaatatgttggacacataaaggttttga 21464011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 22 - 282
Target Start/End: Complemental strand, 35162933 - 35162672
Alignment:
Q  22 tgtccggcaaagatgatcgtttgggtcgaatcttctctaattagaaatagaaaagggtgatcggctataaagtctattccagttggcatacacatggcca 121  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||||||||  ||||| ||||| ||||||||||||| ||| ||||| |||||| ||||||    
T  35162933 tgtcccgcaaagaggattgtttgggtcgaatcttctctaattagaaataagaaaggatgatcagctataaagtctactccggttggaatacacttggcca 35162834  T
Q  122 ccactgcaacactggccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaag 221  Q
      | ||||   ||||| ||||||||| | ||||||| ||| ||||| ||||||||||||||||||||||||||||||||  |||||| ||||||||||||    
T  35162833 taagtgcacagctggctgcagcagctacggtgcctttctcatttacttcaatgaaagacttgtgaaatatgttggaaactaaaaggttttgaccttcaag 35162734  T
Q  222 agagtccacca-ttttgttaaacctccagaagagaaaggtaaactcactcctaactccttca 282  Q
     |||||||||| |||||| |||||||||||||||||||||||| |||||||||  |||||||    
T  35162733 tgagtccaccatttttgtcaaacctccagaagagaaaggtaaaatcactcctagatccttca 35162672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 22 - 273
Target Start/End: Complemental strand, 35155913 - 35155661
Alignment:
Q  22 tgtccggcaaagatgatcgtttgggtcgaatcttctctaattagaaatagaaaagggtgatcggctataaagtctattccagttggcatacacatggcca 121  Q
    ||||||||||||| ||| ||||||||| ||||||||||||||| |||||  ||||||||||| ||||||||||||| ||| ||||   ||| || ||  |    
T  35155913 tgtccggcaaagaggattgtttgggtcaaatcttctctaattaaaaataagaaagggtgatcagctataaagtctagtccggttgatctacccaaggtaa 35155814  T
Q  122 ccactgcaacactggccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaag 221  Q
      | || |  |||||| ||| |||||| ||||||||  |||||||| ||||| ||| |||| ||||||||||||  ||| || || | ||||||||||||    
T  35155813 ataatgtagtactggctgcaacagctttagtgcctttttcgtttacttcaataaaacacttctgaaatatgttgctaacggagagattttgaccttcaag 35155714  T
Q  222 agagtccacca-ttttgttaaacctccagaagagaaaggtaaactcactccta 273  Q
    ||||||||||| |||||| ||||| |||||||||||||||||| |||||||||    
T  35155713 agagtccaccatttttgtcaaacccccagaagagaaaggtaaaatcactccta 35155661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 139 - 282
Target Start/End: Complemental strand, 15556390 - 15556246
Alignment:
Q  139 gcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccaccatttt-g 237  Q
    |||||||||||||||||||| |||||||| |  ||||||||||| || |||||||| |||||| | |||||||||||  |||| |||||||||||||| |    
T  15556390 gcagcagcttcagtgccttcttcgtttacttggatgaaagacttttggaatatgttagaaacaaacaggtcttgacccgcaagtgagtccaccattttag 15556291  T
Q  238 ttaaacctccagaagagaaaggtaaactcactcctaactccttca 282  Q
    | |||||||| | |||||||||||||  ||||||||  |||||||    
T  15556290 tcaaacctccgggagagaaaggtaaaaccactcctaggtccttca 15556246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 139 - 284
Target Start/End: Original strand, 46236538 - 46236687
Alignment:
Q  139 gcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaa---gagagtccacca-tt 234  Q
    |||||| ||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||| | |||| || ||| ||||    ||| ||||| | ||    
T  46236538 gcagcaacttcagtgccttcttcatttacttcaatgaaagatttgtgaaatatgttggaaacatataggttttcaccctcaaaagaagaatccacaattt 46236637  T
Q  235 ttgttaaacctccagaagagaaaggtaaactcactcctaactccttcatc 284  Q
    |||| |||||||||| ||||||||||||| ||||||||||||||||||||    
T  46236638 ttgtaaaacctccagcagagaaaggtaaaatcactcctaactccttcatc 46236687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 131 - 282
Target Start/End: Original strand, 47397047 - 47397199
Alignment:
Q  131 cactggccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccac 230  Q
    |||| |||| |||| ||| |||||||| ||| ||||| ||||||||| |||| |||||||||||||||||| |||||| ||||||  | ||| ||||||     
T  47397047 cactagccgaagcaactttagtgcctttctcatttacttcaatgaaatacttctgaaatatgttggaaacaaaaaggttttgacccgctagaaagtccat 47397146  T
Q  231 ca-ttttgttaaacctccagaagagaaaggtaaactcactcctaactccttca 282  Q
    || |||||||||||||||    |||||||||||| ||||||||||||||||||    
T  47397147 catttttgttaaacctccgagggagaaaggtaaaatcactcctaactccttca 47397199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 46480171 - 46480093
Alignment:
Q  136 gccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgac 214  Q
    ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||| |||||| |||||    
T  46480171 gccgcagcagcttcagtgccttcttcatttacttcaatgaaagacttgtgaaatatattggaaacacaaaggttttgac 46480093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 263
Target Start/End: Complemental strand, 16025862 - 16025737
Alignment:
Q  139 gcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccacca-ttttg 237  Q
    |||||| ||||||| ||||| || ||||| || |||||||| ||||||||||||   |||||| | |||||||||  ||||||| ||||||||| |||||    
T  16025862 gcagcaacttcagttccttcttcatttacttcgatgaaagatttgtgaaatatgcgagaaacaaagaggtcttgatgttcaagaaagtccaccatttttg 16025763  T
Q  238 ttaaacctccagaagagaaaggtaaa 263  Q
    | |||||||||| |||||||||||||    
T  16025762 tcaaacctccaggagagaaaggtaaa 16025737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 137 - 282
Target Start/End: Complemental strand, 46544852 - 46544706
Alignment:
Q  137 ccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccaccat-tt 235  Q
    |||||||||||||||| || |  || ||||| ||||| ||||||||||| ||||||||||||| |  ||||| |||| |   | ||||||||||||| ||    
T  46544852 ccgcagcagcttcagttcccttttcatttacttcaataaaagacttgtggaatatgttggaaatatgaaggttttgatccataggagagtccaccatatt 46544753  T
Q  236 tgttaaacctccagaagagaaaggtaaactcactcctaactccttca 282  Q
    ||| |||||||| | |||||||||||||  |||||||| ||||||||    
T  46544752 tgtcaaacctcctgtagagaaaggtaaaaccactcctagctccttca 46544706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 139 - 273
Target Start/End: Complemental strand, 5156626 - 5156488
Alignment:
Q  139 gcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaagg-tcttgaccttcaa---gagagtccacca-t 233  Q
    |||||||||||||||||||| || ||||| ||||||||||| ||||||||||| || |||||||||||| | ||| ||  |||   |||||||||||| |    
T  5156626 gcagcagcttcagtgccttcttcatttacttcaatgaaagatttgtgaaatattttagaaacagaaaggctattg-cccacaagaggagagtccaccatt 5156528  T
Q  234 tttgttaaacctccagaagagaaaggtaaactcactccta 273  Q
    ||||| |||||||||  || |||||||||| |||||||||    
T  5156527 tttgtcaaacctccacgagtgaaaggtaaaatcactccta 5156488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 139 - 282
Target Start/End: Original strand, 46526169 - 46526316
Alignment:
Q  139 gcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgac---cttcaagagagtccaccat-t 234  Q
    ||||||||||| |||||| |||| ||||| ||||||| ||||||||||||||| ||||||||  |||||| |||||   | |   |||||||||| || |    
T  46526169 gcagcagcttcggtgcctccctcatttacttcaatgagagacttgtgaaatattttggaaacgtaaaggttttgacttgcgtgttgagagtccacaatat 46526268  T
Q  235 ttgttaaacctccagaagagaaaggtaaactcactcctaactccttca 282  Q
    |||| ||||| ||| |||||||||||||| ||||| ||||||| ||||    
T  46526269 ttgtcaaacccccacaagagaaaggtaaaatcacttctaactctttca 46526316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 214
Target Start/End: Complemental strand, 46498331 - 46498251
Alignment:
Q  134 tggccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgac 214  Q
    |||||||||||||||  |||||||| || ||||| ||||||||||||||||| ||||| ||||||||| |||||| |||||    
T  46498331 tggccgcagcagctttggtgccttcttcatttacttcaatgaaagacttgtggaatattttggaaacataaaggttttgac 46498251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 46236404 - 46236482
Alignment:
Q  18 cacctgtccggcaaagatgatcgtttgggtcgaatcttctctaattagaaatagaaaagggtgatcggctataaagtct 96  Q
    ||||||||| ||||||| ||| |||  ||||||| ||||||||||||||||||| ||||||||||| |||| |||||||    
T  46236404 cacctgtccagcaaagaggattgttccggtcgaaacttctctaattagaaataggaaagggtgatcagctacaaagtct 46236482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 282
Target Start/End: Complemental strand, 5160668 - 5160508
Alignment:
Q  126 tgcaacactggccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagaga- 224  Q
    |||| ||||| | ||| |||||||||  ||||| || ||||| ||||||||||| ||||||||||| || ||||| ||||||   | |||  |||||||     
T  5160668 tgcagcactgactgcaacagcttcagcaccttcttcatttacttcaatgaaagatttgtgaaatattttagaaactgaaaggctatcacccacaagagaa 5160569  T
Q  225 --gtccaccatttt-gttaaacctccagaagagaaaggtaaactcactcctaactccttca 282  Q
      |||||||||||| || |||||| ||  || |||||||||| ||||||||||||||||||    
T  5160568 gagtccaccatttttgtcaaaccttcacgagtgaaaggtaaagtcactcctaactccttca 5160508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 282
Target Start/End: Original strand, 45883483 - 45883624
Alignment:
Q  139 gcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccacca-ttttg 237  Q
    |||||||||||||||||||| || || || ||||||||||||| |||||| ||||  |||| | |||||||||||   |   || ||||||||| |||||    
T  45883483 gcagcagcttcagtgccttcttcattaacttcaatgaaagactagtgaaaaatgtgagaaatataaaggtcttga---tttggatagtccaccatttttg 45883579  T
Q  238 ttaaacctccagaagagaaaggtaaactcactcctaactccttca 282  Q
    | |||| ||||  |||||||||| ||  |||||||||||||||||    
T  45883580 tcaaacttccacgagagaaaggtgaaaccactcctaactccttca 45883624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 4581132 - 4581197
Alignment:
Q  136 gccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaaca 201  Q
    ||||||||||||||||| ||| | || ||||| ||||| ||||||||||||||||| |||||||||    
T  4581132 gccgcagcagcttcagtacctgcttcatttacttcaataaaagacttgtgaaatatcttggaaaca 4581197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 4613589 - 4613654
Alignment:
Q  136 gccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaaca 201  Q
    ||||||||||||||||| ||| | || ||||| ||||| ||||||||||||||||| |||||||||    
T  4613589 gccgcagcagcttcagtacctgcttcatttacttcaataaaagacttgtgaaatatcttggaaaca 4613654  T

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Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 46548750 - 46548819
Alignment:
Q  139 gcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggt 208  Q
    |||||||||||| | ||||| || ||||| ||||||||||||||||||||||| || |||||| ||||||    
T  46548750 gcagcagcttcattaccttcttcttttacttcaatgaaagacttgtgaaatattttagaaacataaaggt 46548819  T

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Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 47413821 - 47413889
Alignment:
Q  29 caaagatgatcgtttgggtcgaatcttctctaattagaaatagaaaagggtgatcggctataaagtcta 97  Q
    |||||| ||| |||| ||| ||||||||||||||||||||||  |||||||| ||||||| ||||||||    
T  47413821 caaagaggattgtttcggttgaatcttctctaattagaaataagaaagggtggtcggctacaaagtcta 47413889  T

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Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 137 - 213
Target Start/End: Original strand, 47413941 - 47414017
Alignment:
Q  137 ccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttga 213  Q
    |||||||||||||||| ||||| || || || || |||||||||||||||||||| | ||||||| || ||||||||    
T  47413941 ccgcagcagcttcagttccttcttcattcacttcgatgaaagacttgtgaaatatctgggaaacaaaatggtcttga 47414017  T

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Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 46484419 - 46484360
Alignment:
Q  138 cgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttgga 197  Q
    ||||||||||||||||||||| || ||||| ||||||||||| ||||| ||||| |||||    
T  46484419 cgcagcagcttcagtgccttcttcatttacttcaatgaaagatttgtgcaatatattgga 46484360  T

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Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 46491086 - 46491029
Alignment:
Q  134 tggccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatat 191  Q
    |||| ||| ||||||| |||||||| || ||||||||||| |||||||||||||||||    
T  46491086 tggctgcaacagcttcggtgccttcttcatttacatcaataaaagacttgtgaaatat 46491029  T

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Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 46532285 - 46532224
Alignment:
Q  139 gcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaac 200  Q
    |||||||||||||||||||  || ||||| ||||||||||| || ||||||||||| |||||    
T  46532285 gcagcagcttcagtgcctttttcatttacttcaatgaaagaattttgaaatatgttagaaac 46532224  T

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Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 282
Target Start/End: Original strand, 46554026 - 46554075
Alignment:
Q  233 ttttgttaaacctccagaagagaaaggtaaactcactcctaactccttca 282  Q
    ||||||||||||||||  ||||||||||||| ||||||| ||||||||||    
T  46554026 ttttgttaaacctccattagagaaaggtaaaatcactcccaactccttca 46554075  T

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Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 280
Target Start/End: Complemental strand, 46539376 - 46539233
Alignment:
Q  138 cgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccacca-tttt 236  Q
    |||||||||||  || ||||  || ||||| ||||| ||||||||||| ||||  | ||||||| |||||| ||||| |  | |||||||||||| ||||    
T  46539376 cgcagcagctttggttccttgttcatttacttcaataaaagacttgtggaatacatcggaaacataaaggttttgacttgtaggagagtccaccattttt 46539277  T
Q  237 gttaaacctccagaagagaaaggtaaactcactcctaactcctt 280  Q
    || ||||||||   |||||||||||||  || ||||| ||||||    
T  46539276 gtcaaacctccttgagagaaaggtaaaaccattcctagctcctt 46539233  T

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Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 5156717 - 5156671
Alignment:
Q  54 ttctctaattagaaatagaaaagggtgatcggctataaagtctattc 100  Q
    |||||||||||||||||  ||||||||||| |||| |||||||||||    
T  5156717 ttctctaattagaaataagaaagggtgatcagctacaaagtctattc 5156671  T

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Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 46474301 - 46474243
Alignment:
Q  139 gcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttgga 197  Q
    |||||||||||||||||||| || ||||| ||||||||| | ||||| ||||| |||||    
T  46474301 gcagcagcttcagtgccttcttcatttacttcaatgaaatatttgtgcaatatattgga 46474243  T

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Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 53391030 - 53390988
Alignment:
Q  159 ctcgtttacatcaatgaaagacttgtgaaatatgttggaaaca 201  Q
    ||||||||| ||||||||||||||||||||||| || ||||||    
T  53391030 ctcgtttacttcaatgaaagacttgtgaaatatatttgaaaca 53390988  T

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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 126 - 280
Target Start/End: Complemental strand, 20145020 - 20144865
Alignment:
Q  126 tgcaacactggccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagag 225  Q
    |||| |||| || |||||| |||| || ||||| ||||||||    ||||||||||||||||||||||  ||||||||||||  ||||||  ||||||||    
T  20145020 tgcagcactagctgcagcaacttcggtaccttcttcgtttactctgatgaaagacttgtgaaatatgtgagaaacagaaaggctttgacccgcaagagag 20144921  T
Q  226 tccacca-ttttgttaaacctccagaagagaaaggtaaactcactcctaactcctt 280  Q
    ||||||| |||||| |||||||||| | |||| ||||||  |||||||||||||||    
T  20144920 tccaccatttttgtcaaacctccaggaaagaatggtaaaaccactcctaactcctt 20144865  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 280
Target Start/End: Original strand, 20168754 - 20168909
Alignment:
Q  126 tgcaacactggccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagag 225  Q
    |||| |||| || |||||| |||| || ||||| ||||||||    ||||||||||||||||||||||  |||||| |||||  ||||||  | | |||     
T  20168754 tgcagcactagctgcagcaacttcggtaccttcttcgtttactctgatgaaagacttgtgaaatatgtgagaaacaaaaaggctttgacccgcgatagaa 20168853  T
Q  226 tccacca-ttttgttaaacctccagaagagaaaggtaaactcactcctaactcctt 280  Q
    ||||||| |||||| |||||||||| | |||| |||||| ||||||||||| ||||    
T  20168854 tccaccatttttgtcaaacctccaggaaagaatggtaaaatcactcctaacccctt 20168909  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 280
Target Start/End: Complemental strand, 20359484 - 20359375
Alignment:
Q  172 atgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccaccattttgtt-aaacctccagaagagaaaggtaaactcactc 270  Q
    |||||||||||||||||||||   |||||| |||||  ||||||  | | ||| ||||||||||| || |||||||||| | |||| |||||| ||||||    
T  20359484 atgaaagacttgtgaaatatgcgagaaacaaaaaggctttgacccgcgatagaatccaccatttttttcaaacctccaggaaagaatggtaaagtcactc 20359385  T
Q  271 ctaactcctt 280  Q
    ||||||||||    
T  20359384 ctaactcctt 20359375  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 274
Target Start/End: Complemental strand, 17708636 - 17708515
Alignment:
Q  154 ccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccacca-ttttgttaaacctccagaag 252  Q
    ||||| || ||||| |||||||||||||| |||||||||  ||||||| |||| ||||||| |  | |||||||||||| |||||| ||||||||   ||    
T  17708636 ccttcttcatttacttcaatgaaagacttctgaaatatgccggaaacataaagttcttgacttataggagagtccaccatttttgtcaaacctcccatag 17708537  T
Q  253 agaaaggtaaactcactcctaa 274  Q
    | ||||||||| ||| ||||||    
T  17708536 aaaaaggtaaagtcaatcctaa 17708515  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 17699544 - 17699445
Alignment:
Q  137 ccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccaccatttt 236  Q
    |||| |||||||  || ||||| || ||||| |||||||||||||| |||||||||  ||||||| |||| ||||||| |  | ||||||||||||||||    
T  17699544 ccgctgcagctttcgtaccttcttcatttacttcaatgaaagacttctgaaatatgccggaaacataaagttcttgacttataggagagtccaccatttt 17699445  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 17736275 - 17736208
Alignment:
Q  169 tcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccaccatttt 236  Q
    |||||||||||||| ||||||||| ||| ||||||||| ||||||| |  | ||||||||||||||||    
T  17736275 tcaatgaaagacttctgaaatatgctggtaacagaaagttcttgacttataggagagtccaccatttt 17736208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 236
Target Start/End: Complemental strand, 16722513 - 16722431
Alignment:
Q  154 ccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccaccatttt 236  Q
    ||||| || ||||| |||||||||||||| |||||||||  ||||||| |||| ||||||| |  | ||||||||||||||||    
T  16722513 ccttcttcatttacttcaatgaaagacttctgaaatatgccggaaacataaagttcttgacttataggagagtccaccatttt 16722431  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 274
Target Start/End: Complemental strand, 17718477 - 17718339
Alignment:
Q  137 ccgcagcagcttcagtgccttcctcgtttacatcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccacca-ttt 235  Q
    |||| |||||||  || ||||| |||||||| |||||| ||||||| |||| ||||| ||||||| | |  ||||||| |  | |||||||||||| |||    
T  17718477 ccgctgcagcttttgtaccttcttcgtttacttcaatgcaagacttctgaagtatgtcggaaacaaatatttcttgacttataggagagtccaccatttt 17718378  T
Q  236 tgttaaacctccagaagagaaaggtaaactcactcctaa 274  Q
    ||| ||||||||   ||| ||||||||| ||| ||||||    
T  17718377 tgtcaaacctcccatagaaaaaggtaaagtcaatcctaa 17718339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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