View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13706_high_27 (Length: 277)

Name: NF13706_high_27
Description: NF13706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13706_high_27
NF13706_high_27
[»] chr3 (18 HSPs)
chr3 (13-264)||(46554245-46554509)
chr3 (41-230)||(46531769-46531958)
chr3 (41-167)||(46483961-46484087)
chr3 (59-173)||(46538892-46539006)
chr3 (39-173)||(46544364-46544498)
chr3 (41-222)||(46473787-46473968)
chr3 (41-228)||(46479642-46479829)
chr3 (41-158)||(45902876-45902993)
chr3 (102-229)||(16025332-16025459)
chr3 (41-230)||(45883821-45884010)
chr3 (86-230)||(5160125-5160268)
chr3 (102-221)||(46490568-46490687)
chr3 (46-156)||(46549078-46549188)
chr3 (41-166)||(46526511-46526635)
chr3 (102-167)||(51943803-51943868)
chr3 (86-228)||(5156097-5156239)
chr3 (41-123)||(4613925-4614007)
chr3 (149-229)||(47414380-47414460)
[»] chr7 (6 HSPs)
chr7 (47-228)||(17735779-17735960)
chr7 (47-228)||(17708125-17708306)
chr7 (47-222)||(17717955-17718130)
chr7 (49-222)||(17744966-17745139)
chr7 (46-228)||(16722002-16722184)
chr7 (46-228)||(17699016-17699198)
[»] chr4 (3 HSPs)
chr4 (116-230)||(15555862-15555976)
chr4 (41-158)||(35162361-35162478)
chr4 (101-165)||(35155333-35155397)
[»] chr8 (1 HSPs)
chr8 (46-165)||(21464281-21464400)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 264
Target Start/End: Original strand, 46554245 - 46554509
Alignment:
Q  13 agagagatgacggtcatctatagtaccatgctcataaggaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatg 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  46554245 agagaaatgacggtcatctatagtaccatgctcataaggaagacgaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctggtcttg 46554344  T
Q  113 aagggaaccttgaatgagctaccatctagaaggtgaaaatcatagtcttttgtttctgaagcgtcaaacggttgatgccatgcacctttaaagtatagtg 212  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  46554345 aagggaaccttgaatgagctaccatcaagaaggtgaaaatcatagtcttttgtttctgaagcgtcaaacggttgatgccatgcacctttaaaatatagtg 46554444  T
Q  213 cattagcaaaaatgag-------------tcaattgacccgcacgaaagaacatcagtaataagt 264  Q
    ||||||||||||||||             ||||||||||||||||||||||||||||||||||||    
T  46554445 cattagcaaaaatgagtctggttaaactatcaattgacccgcacgaaagaacatcagtaataagt 46554509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 41 - 230
Target Start/End: Complemental strand, 46531958 - 46531769
Alignment:
Q  41 tgctcataaggaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatcta 140  Q
    |||| ||||||||||| ||||| |||||||||||||||| || | ||||||||  ||| | |||||||||||||||||||||| | |||||| ||| | |    
T  46531958 tgcttataaggaagacgaaggatcttaaaaccatcaaaagcatttataaactgcttcttcttgctagtcatgaagggaaccttaattgagctgccaccga 46531859  T
Q  141 gaaggtgaaaatcatagtcttttgtttctgaagcgtcaaacggttgatgccatgcacctttaaagtatagtgcattagcaaaaatgagtc 230  Q
    ||||||||||||||| ||||||||||| |||||| ||||| |||||||||||||| || |||||||| ||||||||||||||||||||||    
T  46531858 gaaggtgaaaatcatggtcttttgtttttgaagcatcaaatggttgatgccatgctccattaaagtagagtgcattagcaaaaatgagtc 46531769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 41 - 167
Target Start/End: Complemental strand, 46484087 - 46483961
Alignment:
Q  41 tgctcataaggaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatcta 140  Q
    |||| ||||||||||||||| || ||||||||||||||| | || ||||||||  ||| | |||||||||| ||||||||||||| |||||| ||||  |    
T  46484087 tgcttataaggaagaccaagaactttaaaaccatcaaaagctctaataaactgcttcttcttgctagtcataaagggaaccttgactgagctgccattga 46483988  T
Q  141 gaaggtgaaaatcatagtcttttgttt 167  Q
    |||||||||||||||||||||||||||    
T  46483987 gaaggtgaaaatcatagtcttttgttt 46483961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 59 - 173
Target Start/End: Complemental strand, 46539006 - 46538892
Alignment:
Q  59 aggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatctagaaggtgaaaatcatagt 158  Q
    ||||| |||||||||||||||||||| ||||  || | ||||| ||| ||||||||||||||||||| |||||| ||||  ||||||| |||||||||||    
T  46539006 aggactttaaaaccatcaaaaacactaataagttgtcactcccggcttgtcatgaagggaaccttgactgagctgccattaagaaggttaaaatcatagt 46538907  T
Q  159 cttttgtttctgaag 173  Q
    ||||||||| |||||    
T  46538906 cttttgtttttgaag 46538892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 39 - 173
Target Start/End: Complemental strand, 46544498 - 46544364
Alignment:
Q  39 catgctcataaggaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatc 138  Q
    |||||| ||||  ||||| |||||| |||||||||||||||||||||||||| || |||| | |||| |||||||| |||||||||| |  ||| ||||     
T  46544498 catgcttataaaaaagacgaaggactttaaaaccatcaaaaacactgataaattgtctcttcatgcttgtcatgaaaggaaccttgacttggctgccatt 46544399  T
Q  139 tagaaggtgaaaatcatagtcttttgtttctgaag 173  Q
     ||||||| |||||||||||||||||||| |||||    
T  46544398 gagaaggttaaaatcatagtcttttgtttttgaag 46544364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 41 - 222
Target Start/End: Complemental strand, 46473968 - 46473787
Alignment:
Q  41 tgctcataaggaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatcta 140  Q
    |||| ||||||||||||||| || ||||||||||||||| | || ||||||||  ||| | |||||||||| |||| |||||| | |||||| ||||  |    
T  46473968 tgcttataaggaagaccaagaactttaaaaccatcaaaagctctaataaactgcttcttcttgctagtcataaaggaaaccttaactgagctgccattga 46473869  T
Q  141 gaaggtgaaaatcatagtcttttgtttctgaagcgtcaaacggttgatgccatgcacctttaaagtatagtgcattagcaaa 222  Q
    |||||| |||||||||||||||||||  |||||| |||| |   |||| |||||  |||||||| || | ||||||||||||    
T  46473868 gaaggtaaaaatcatagtcttttgttgttgaagcatcaatcttctgattccatgatcctttaaaatacaatgcattagcaaa 46473787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 46479829 - 46479642
Alignment:
Q  41 tgctcataaggaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatcta 140  Q
    |||| |||||||||||| || || ||||||||||||||| | || ||||||||  ||| | |||| ||||||||||||||||||| || ||||||||  |    
T  46479829 tgcttataaggaagaccgagaactttaaaaccatcaaaagctctaataaactgcttcttcttgctggtcatgaagggaaccttgactgggctaccattca 46479730  T
Q  141 gaaggtgaaaatcatagtcttttgtttctgaagcgtcaaacggttgatgccatgcacctttaaagtatagtgcattagcaaaaatgag 228  Q
     ||||||||| || |||||||  |||| |||||| ||||||   | || ||| || ||||| |||||||||||||| ||||| |||||    
T  46479729 aaaggtgaaactcgtagtcttccgtttttgaagcatcaaacttatcattccacgctcctttgaagtatagtgcattggcaaagatgag 46479642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 41 - 158
Target Start/End: Complemental strand, 45902993 - 45902876
Alignment:
Q  41 tgctcataaggaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatcta 140  Q
    |||||||||||||||| ||| || || |||||||| ||||| | ||||||||| |||| |  ||| ||||||||||||||||||| ||||||||||| ||    
T  45902993 tgctcataaggaagacgaagtactttgaaaccatcgaaaacgcggataaactgcctcttctcgctggtcatgaagggaaccttgactgagctaccattta 45902894  T
Q  141 gaaggtgaaaatcatagt 158  Q
    |||||| ||||| |||||    
T  45902893 gaaggtaaaaattatagt 45902876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 102 - 229
Target Start/End: Complemental strand, 16025459 - 16025332
Alignment:
Q  102 tgctagtcatgaagggaaccttgaatgagctaccatctagaaggtgaaaatcatagtcttttgtttctgaagcgtcaaacggttgatgccatgcaccttt 201  Q
    |||| |||||||||||||| |||| |  | | ||||  |||| |||||||||||||||||||||||| ||||| |||||| |||||| |||  | |||||    
T  16025459 tgctggtcatgaagggaactttgattacgttgccattcagaatgtgaaaatcatagtcttttgtttccgaagcatcaaactgttgatcccacaccccttt 16025360  T
Q  202 aaagtatagtgcattagcaaaaatgagt 229  Q
    |||||| |||||||||||||| ||||||    
T  16025359 aaagtaaagtgcattagcaaatatgagt 16025332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 230
Target Start/End: Original strand, 45883821 - 45884010
Alignment:
Q  41 tgctcataaggaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatcta 140  Q
    ||||||||||| | || ||| || ||||||||||||||| | || ||||| |||   | | |||| |||||||||||||| |||| ||| |||||||       
T  45883821 tgctcataagggatacaaagcactttaaaaccatcaaaagctctaataaattgatctttcttgctggtcatgaagggaactttgactgaactaccattat 45883920  T
Q  141 gaaggtgaaaatcatagtcttttgtttctgaagcgtcaaacggttgatgccatgcacctttaaagtatagtgcattagcaaaaatgagtc 230  Q
    |||  |||||||| |||| ||||||||  ||||  ||||||||||||| |||||| || |||||||| | |||||||||||| |||||||    
T  45883921 gaatatgaaaatcgtagtattttgttttcgaaggatcaaacggttgattccatgctcccttaaagtacaatgcattagcaaatatgagtc 45884010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 230
Target Start/End: Complemental strand, 5160268 - 5160125
Alignment:
Q  86 ataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatctagaaggtgaaaatcatagtcttttgtttctgaagcgtcaaacggtt 185  Q
    ||||||||| |||||  ||| ||||||||||||||||||| |||||| ||||  | ||||||||||||||||||||| ||||  ||| | ||||||   |    
T  5160268 ataaactgattctcctcgctggtcatgaagggaaccttgactgagct-ccattcaaaaggtgaaaatcatagtctttcgttttcgaaacatcaaacttat 5160170  T
Q  186 gatgccatgcacctttaaagtatagtgcattagcaaaaatgagtc 230  Q
     |  |||||| ||||||||||| |||||||||||||| |||||||    
T  5160169 cactccatgctcctttaaagtagagtgcattagcaaagatgagtc 5160125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 221
Target Start/End: Complemental strand, 46490687 - 46490568
Alignment:
Q  102 tgctagtcatgaagggaaccttgaatgagctaccatctagaaggtgaaaatcatagtcttttgtttctgaagcgtcaaacggttgatgccatgcaccttt 201  Q
    |||||||||||||||||||||| | |||||| ||||  | ||||||||||||||||||||| |||| |||||| ||||||   | || |||  | |||||    
T  46490687 tgctagtcatgaagggaaccttaattgagctgccattcaaaaggtgaaaatcatagtctttcgtttttgaagcatcaaacttatcattccacactccttt 46490588  T
Q  202 aaagtatagtgcattagcaa 221  Q
     |||||||||||||||||||    
T  46490587 gaagtatagtgcattagcaa 46490568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 46 - 156
Target Start/End: Original strand, 46549078 - 46549188
Alignment:
Q  46 ataaggaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatctagaagg 145  Q
    ||||||||||  ||| || || |||||||||||||||||||||||||||   | |||||| || ||||||||||||||||  ||||| ||||  ||||||    
T  46549078 ataaggaagataaagaactttgaaaccatcaaaaacactgataaactgatcattcctgctggttatgaagggaaccttgaccgagctgccattgagaagg 46549177  T
Q  146 tgaaaatcata 156  Q
    |||||||||||    
T  46549178 tgaaaatcata 46549188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 166
Target Start/End: Original strand, 46526511 - 46526635
Alignment:
Q  41 tgctcataaggaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatcta 140  Q
    |||| |||||||||||  || || || |||||||| |||||||||||||| || || | |  ||| ||||||||||||||||||| |||||| |||| ||    
T  46526511 tgcttataaggaagacggagtactttgaaaccatcgaaaacactgataaattgtctattctcgctggtcatgaagggaaccttgactgagctgccattta 46526610  T
Q  141 gaaggtgaaaatcatagtcttttgtt 166  Q
     ||||||||||||||||| |||||||    
T  46526611 -aaggtgaaaatcatagttttttgtt 46526635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 167
Target Start/End: Complemental strand, 51943868 - 51943803
Alignment:
Q  102 tgctagtcatgaagggaaccttgaatgagctaccatctagaaggtgaaaatcatagtcttttgttt 167  Q
    |||| ||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||| ||||    
T  51943868 tgctggtcatgaagggaaccttgactgagctaccatttagaaggtgaaaatcataatctttagttt 51943803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 228
Target Start/End: Complemental strand, 5156239 - 5156097
Alignment:
Q  86 ataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatctagaaggtgaaaatcatagtcttttgtttctgaagcgtcaaacggtt 185  Q
    ||||||||| |||||  ||| |||||||||||||||||||  ||||| ||||  | ||||||||||||||||||||| ||||   || | ||||||   |    
T  5156239 ataaactgattctcctcgctggtcatgaagggaaccttgaccgagctgccattcaaaaggtgaaaatcatagtctttcgttttcaaaacatcaaacttct 5156140  T
Q  186 gatgccatgcacctttaaagtatagtgcattagcaaaaatgag 228  Q
     |  |||||| ||||||||||| |||||||||||||| |||||    
T  5156139 cactccatgctcctttaaagtagagtgcattagcaaagatgag 5156097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 4613925 - 4614007
Alignment:
Q  41 tgctcataaggaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaacctt 123  Q
    |||||| ||||||||| ||| | ||||||| |||||||||||| |||||||||   ||| |  ||||||||||||||||||||    
T  4613925 tgctcaaaaggaagacgaagaatcttaaaatcatcaaaaacaccgataaactgctcctcacaactagtcatgaagggaacctt 4614007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 47414380 - 47414460
Alignment:
Q  149 aaatcatagtcttttgtttctgaagcgtcaaacggttgatgccatgcacctttaaagtatagtgcattagcaaaaatgagt 229  Q
    ||||| |||||||||||||| ||||| |||||  |||||| |||  | ||||| ||||| |||||||||||||| ||||||    
T  47414380 aaatcgtagtcttttgtttccgaagcatcaaattgttgattccacacccctttgaagtacagtgcattagcaaagatgagt 47414460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 228
Target Start/End: Complemental strand, 17735960 - 17735779
Alignment:
Q  47 taaggaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatctagaaggt 146  Q
    ||||||||||||||||| |||||||||||||||  ||||||||||||| | | | |||| ||||| ||||||||||| | |||  | ||||  |||||||    
T  17735960 taaggaagaccaaggactttaaaaccatcaaaagaactgataaactgattattcttgctggtcataaagggaacctttactgacttgccattgagaaggt 17735861  T
Q  147 gaaaatcatagtcttttgtttctgaagcgtcaaacggttgatgccatgcacctttaaagtatagtgcattagcaaaaatgag 228  Q
     |||||||||||| || |||| |||||  ||||||||| | | |||  | ||||| |||||||||||||| ||||| |||||    
T  17735860 caaaatcatagtccttcgtttttgaagtatcaaacggtcgtttccaaactcctttgaagtatagtgcattcgcaaagatgag 17735779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 47 - 228
Target Start/End: Complemental strand, 17708306 - 17708125
Alignment:
Q  47 taaggaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatctagaaggt 146  Q
    |||||||||||||| || |||||||||||||||  |||||||||||||   | | |||| ||||| ||||||||||| | |||  | ||||  |||||||    
T  17708306 taaggaagaccaagaactttaaaaccatcaaaagaactgataaactgatcattcttgctggtcataaagggaacctttactgacttgccattgagaaggt 17708207  T
Q  147 gaaaatcatagtcttttgtttctgaagcgtcaaacggttgatgccatgcacctttaaagtatagtgcattagcaaaaatgag 228  Q
     |||||||||||| || |||| |||||  ||||||||| | |||||  | ||||| || ||||||||||||||||| |||||    
T  17708206 caaaatcatagtccttcgtttttgaagtatcaaacggtcgttgccaaactcctttgaaatatagtgcattagcaaatatgag 17708125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 222
Target Start/End: Complemental strand, 17718130 - 17717955
Alignment:
Q  47 taaggaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatctagaaggt 146  Q
    |||||||||||||| || |||||||||||||||  |||||||||||||   | | |||| ||||| ||||||||||| | |||  | ||||  |||||||    
T  17718130 taaggaagaccaagaactttaaaaccatcaaaagaactgataaactgatcattcttgctggtcataaagggaacctttactgacttgccattgagaaggt 17718031  T
Q  147 gaaaatcatagtcttttgtttctgaagcgtcaaacggttgatgccatgcacctttaaagtatagtgcattagcaaa 222  Q
     |||||||||||| || |||| |||||  ||||| ||||| | |||  | ||||| || ||||||||||| |||||    
T  17718030 caaaatcatagtccttcgtttttgaagtatcaaagggttgtttccacactcctttgaaatatagtgcatttgcaaa 17717955  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 49 - 222
Target Start/End: Complemental strand, 17745139 - 17744966
Alignment:
Q  49 aggaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatctagaaggtga 148  Q
    ||||||||||||||| ||||||||||| ||   |||||||||||||   | | |||| ||||| ||||||||||| | |||  | || |  ||||||| |    
T  17745139 aggaagaccaaggactttaaaaccatctaacgaactgataaactgatcattcttgctggtcataaagggaacctttactgacttgccgttaagaaggtca 17745040  T
Q  149 aaatcatagtcttttgtttctgaagcgtcaaacggttgatgccatgcacctttaaagtatagtgcattagcaaa 222  Q
    ||||||||||| || |||| |||||  ||||||  ||| | |||| | ||||| ||||||||||||||||||||    
T  17745039 aaatcatagtccttcgtttttgaagtatcaaacttttgtttccatactcctttgaagtatagtgcattagcaaa 17744966  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 228
Target Start/End: Complemental strand, 16722184 - 16722002
Alignment:
Q  46 ataaggaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatctagaagg 145  Q
    |||||||||||||||||| ||||||||||| ||   |||||||||||||   | | |||| ||||| || |||||||| | |||  | ||||  ||||||    
T  16722184 ataaggaagaccaaggactttaaaaccatctaacgaactgataaactgatcattcttgctggtcataaatggaacctttactgacttgccattgagaagg 16722085  T
Q  146 tgaaaatcatagtcttttgtttctgaagcgtcaaacggttgatgccatgcacctttaaagtatagtgcattagcaaaaatgag 228  Q
    | |||||||||||| || |||| || ||  || ||| |||| | |||  | ||||| || ||||||||||||||||| |||||    
T  16722084 tcaaaatcatagtccttcgtttttgtagtatcgaactgttgtttccacactcctttgaaatatagtgcattagcaaagatgag 16722002  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 228
Target Start/End: Complemental strand, 17699198 - 17699016
Alignment:
Q  46 ataaggaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatctagaagg 145  Q
    |||||||||||||||||| ||||||||||| ||   |||||||||||||   | | |||| ||||| || |||||||| | |||  | ||||  ||||||    
T  17699198 ataaggaagaccaaggactttaaaaccatctaacgaactgataaactgatcattcttgctggtcataaatggaacctttactgacttgccattgagaagg 17699099  T
Q  146 tgaaaatcatagtcttttgtttctgaagcgtcaaacggttgatgccatgcacctttaaagtatagtgcattagcaaaaatgag 228  Q
    | |||||||||||| || |||| || ||  || ||| |||| | |||  | ||||| || ||||||||||||||||| |||||    
T  17699098 tcaaaatcatagtccttcgtttttgtagtatcgaactgttgtttccacactcctttgaaatatagtgcattagcaaagatgag 17699016  T

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Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 116 - 230
Target Start/End: Complemental strand, 15555976 - 15555862
Alignment:
Q  116 ggaaccttgaatgagctaccatctagaaggtgaaaatcatagtcttttgtttctgaagcgtcaaacggttgatgccatgcacctttaaagtatagtgcat 215  Q
    |||||||||| |||||||||||  ||||||||||||||||||||||| ||||  ||||| ||||||   |||| ||||   ||||||||||| |||||||    
T  15555976 ggaaccttgagtgagctaccattgagaaggtgaaaatcatagtctttcgttttggaagcatcaaacttctgataccatagtcctttaaagtacagtgcat 15555877  T
Q  216 tagcaaaaatgagtc 230  Q
    | ||||| |||||||    
T  15555876 ttgcaaagatgagtc 15555862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 41 - 158
Target Start/End: Complemental strand, 35162478 - 35162361
Alignment:
Q  41 tgctcataaggaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatcta 140  Q
    |||| ||||||||||| ||| || ||||||||||||||| | || |||||||||       || ||||||||||||||||||||| |||||| ||||  |    
T  35162478 tgcttataaggaagacgaagaactttaaaaccatcaaaagctctaataaactgatcaaggttggtagtcatgaagggaaccttgactgagcttccattca 35162379  T
Q  141 gaaggtgaaaatcatagt 158  Q
    ||||||||||||||||||    
T  35162378 gaaggtgaaaatcatagt 35162361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 35155397 - 35155333
Alignment:
Q  101 ctgctagtcatgaagggaaccttgaatgagctaccatctagaaggtgaaaatcatagtcttttgt 165  Q
    ||||| ||||||||||||||||||| |||||| ||||  ||||||||||||||||| | ||||||    
T  35155397 ctgctggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcatatttttttgt 35155333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 165
Target Start/End: Original strand, 21464281 - 21464400
Alignment:
Q  46 ataaggaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatctagaagg 145  Q
    ||||||||||| |||||| ||||||||||||| |||||||||| ||||  || |   ||| |||||||| ||||||||||  | ||||||||  |||| |    
T  21464281 ataaggaagacgaaggactttaaaaccatcaagaacactgatatactgcatcacatagctggtcatgaaaggaaccttgaccgggctaccattaagaatg 21464380  T
Q  146 tgaaaatcatagtcttttgt 165  Q
    |||||||| |||||| ||||    
T  21464381 tgaaaatcgtagtctcttgt 21464400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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