View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13706_high_35 (Length: 237)
Name: NF13706_high_35
Description: NF13706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13706_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 17797567 - 17797770
Alignment:
| Q |
1 |
ataggaaccttgatctattgtagtgtcatatagcctcggcgtcataggttgtgtgggatcagaaaagccgttccaggacacgccaatgatttatgatatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17797567 |
ataggaaccttgatctattgtagtgtcatatagcctcggcgtcatagcttgtgtgggatcagaaaagccgttccaggacacgccaatgatttatgatatt |
17797666 |
T |
|
| Q |
101 |
ttgatgtataatttgatcaattacatatatcaaaagaaataataccttcacaacacagaaagcttcattgtaataaacacactcatccctcatagcacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17797667 |
ttgatgtataatttgatcaattacatatatcaaaagaaataataccttcacaacaccgaaagcttcattgtaataaacacactcatccctcatagcacca |
17797766 |
T |
|
| Q |
201 |
aaag |
204 |
Q |
| |
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|||| |
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| T |
17797767 |
aaag |
17797770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 19106007 - 19106210
Alignment:
| Q |
1 |
ataggaaccttgatctattgtagtgtcatatagcctcggcgtcataggttgtgtgggatcagaaaagccgttccaggacacgccaatgatttatgatatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19106007 |
ataggaaccttgatctattgtagtgtcatatagcctcggcgtcatagcttgtgtgggatcagaaaagccgttccaggacacgccaatgatttatgatatt |
19106106 |
T |
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| Q |
101 |
ttgatgtataatttgatcaattacatatatcaaaagaaataataccttcacaacacagaaagcttcattgtaataaacacactcatccctcatagcacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19106107 |
ttgatgtataatttgatcaattacatatatcaaaagaaataataccttcacaacaccgaaagcttcattgtaataaacacactcatccctcatagcacca |
19106206 |
T |
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| Q |
201 |
aaag |
204 |
Q |
| |
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|||| |
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| T |
19106207 |
aaag |
19106210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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