View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13706_high_7 (Length: 479)
Name: NF13706_high_7
Description: NF13706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13706_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 19 - 474
Target Start/End: Original strand, 38057806 - 38058260
Alignment:
| Q |
19 |
tatttccctacactgctactagtacagtacaaactacaaaatcgtttataaatttgcagcatcatatacacaacatcataaacnnnnnnnntgatgcctc |
118 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38057806 |
tatttccctacactcctactagtacagtacaaactacaaaatcgtttataaatttgcagcatcatatacacaacatcataaacaaaaaaa-tgatgcctc |
38057904 |
T |
|
| Q |
119 |
taaactcatattttactattctactaattgctctcttattttcatatacatcttctgcaattgatactagtacacatggagaaaatttccttcaatgtct |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
38057905 |
taaactcatattttactattctactaattgctctcttattttcatatacatcttcttcaattgatactagtacacatgaagaaaatttccttgaatgtct |
38058004 |
T |
|
| Q |
219 |
ctatagttattcacataactcaacttcaatctctgaagttgtgtacaccaaaaccaattcctcttactcatcgatactcaaatttacaactcaaaatctc |
318 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38058005 |
ctatagttattcacataactcaacttcaatctctgaagttgtgtacaccaaaaccaattcctcttactcatcgatactcaaatttacaactcaaaatctc |
38058104 |
T |
|
| Q |
319 |
agatttgcatccaacacaacacctaaacctcttgtcattatcacacctaaacagatttcccaaattcaaacaaccataatctgttcacaaatccacaacc |
418 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38058105 |
agatttgcatccaacacaacacctaaacctcttttcattatcacacctaaacagatttcccaaattcaaacaaccataatctgttcacaaatccacaacc |
38058204 |
T |
|
| Q |
419 |
tgcagattcgaatccgaagtggtggccatgactttgagggtcggtcctatgcttct |
474 |
Q |
| |
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||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||| |
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|
| T |
38058205 |
tgcagattcgaatccgaagcggtggccatgattttgagggtcggtcctatgtttct |
38058260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 110 - 474
Target Start/End: Complemental strand, 38062558 - 38062194
Alignment:
| Q |
110 |
tgatgcctctaaactcatattttactattctactaattgctctcttattttcatatacatcttctgcaattgatactagtacacatggagaaaatttcct |
209 |
Q |
| |
|
|||| ||||||| |||||||| | |||| ||||||||||| | || ||||||| |||| ||||||||||||||||| || ||||| |||||||||||| |
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|
| T |
38062558 |
tgattcctctaagatcatatttgattattgtactaattgctgttttcttttcattcacatattctgcaattgatactactaaacatgaagaaaatttcct |
38062459 |
T |
|
| Q |
210 |
tcaatgtctctatagttattcacataactcaacttcaatctctgaagttgtgtacaccaaaaccaattcctcttactcatcgatactcaaatttacaact |
309 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| |||||| ||||||| ||| |
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| T |
38062458 |
acaatgtctctatagttattcacataactcaacttcaatgtctaaacttgtgtacaccaaaaccaattcctcttactcatcaatactccaatttaccact |
38062359 |
T |
|
| Q |
310 |
caaaatctcagatttgcatccaacacaacacctaaacctcttgtcattatcacacctaaacagatttcccaaattcaaacaaccataatctgttcacaaa |
409 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
38062358 |
caaaatctcagatttgcatccaaaacaacaccgaaacctcttgtcattatcacacctaaacatatttcccaaattcaaacaaccataatctgttcccaaa |
38062259 |
T |
|
| Q |
410 |
tccacaacctgcagattcgaatccgaagtggtggccatgactttgagggtcggtcctatgcttct |
474 |
Q |
| |
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|| |||||||||||||||||||||| || ||||| ||||| |||||||||||||||| |||| |
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|
| T |
38062258 |
gacatgacctgcagattcgaatccgaagcggcggccacgacttcgagggtcggtcctatgtttct |
38062194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 156 - 460
Target Start/End: Original strand, 38072270 - 38072574
Alignment:
| Q |
156 |
attttcatatacatcttctgcaattgatactagtacacatggagaaaatttccttcaatgtctctatagttattcacataactcaacttcaatctctgaa |
255 |
Q |
| |
|
|||||||| |||||||| |||||||||||| ||| | |||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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|
| T |
38072270 |
attttcatttacatcttttgcaattgatacaagtcctcatgaagataatttccttcaatgtctctatagttattcacataacataacttcaatctctaaa |
38072369 |
T |
|
| Q |
256 |
gttgtgtacaccaaaaccaattcctcttactcatcgatactcaaatttacaactcaaaatctcagatttgcatccaacacaacacctaaacctcttgtca |
355 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||||| ||| |||||| |||||||||||| |||| |||||| ||||| ||||||| |
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| T |
38072370 |
gttgtgtacacaaaaaccaattcctcttactcatcaatactcaaattttcaattcaaaacctcagatttgcaaccaatgaaacaccaaaaccccttgtca |
38072469 |
T |
|
| Q |
356 |
ttatcacacctaaacagatttcccaaattcaaacaaccataatctgttcacaaatccacaacctgcagattcgaatccgaagtggtggccatgactttga |
455 |
Q |
| |
|
|||||||||||| ||| |||||||| ||||||||| ||||||||||||| ||| ||| | |||| |||||||| || ||||||||||| ||||| || |
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| T |
38072470 |
ttatcacacctacacaaatttcccatattcaaacagccataatctgttcccaacaccatggcatgcaaattcgaattcgtagtggtggccacgacttcga |
38072569 |
T |
|
| Q |
456 |
gggtc |
460 |
Q |
| |
|
||||| |
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|
| T |
38072570 |
gggtc |
38072574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 110 - 458
Target Start/End: Original strand, 38081309 - 38081657
Alignment:
| Q |
110 |
tgatgcctctaaactcatattttactattctactaattgctctcttattttcatatacatcttctgcaattgatactagtacacatggagaaaatttcct |
209 |
Q |
| |
|
|||||||||||| ||||||||| || || ||| |||||| | |||||||||||| ||||||||||||||||||||| ||| ||| ||| || ||||| |
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|
| T |
38081309 |
tgatgcctctaagctcatatttgtctgttgcacttattgctattttattttcatatgcatcttctgcaattgatactaatacttatgaagataacttcct |
38081408 |
T |
|
| Q |
210 |
tcaatgtctctatagttattcacataactcaacttcaatctctgaagttgtgtacaccaaaaccaattcctcttactcatcgatactcaaatttacaact |
309 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||||||||||||||| |
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|
| T |
38081409 |
tcaatgtctttctagttattcacataactcaacttcaatctctaaagttgtgtacaccaaaaccaatccctcttactcaccagtactcaaatttacaact |
38081508 |
T |
|
| Q |
310 |
caaaatctcagatttgcatccaacacaacacctaaacctcttgtcattatcacacctaaacagatttcccaaattcaaacaaccataatctgttcacaaa |
409 |
Q |
| |
|
|||||||| |||||||||||| ||| |||||| ||||| |||||||| ||||||||| | | |||||| ||||||||| ||||||| ||||| |||| |
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|
| T |
38081509 |
caaaatctaagatttgcatcctacaaaacaccaaaaccacttgtcatcatcacacctctagaaccttcccatattcaaacagccataatttgttcccaaa |
38081608 |
T |
|
| Q |
410 |
tccacaacctgcagattcgaatccgaagtggtggccatgactttgaggg |
458 |
Q |
| |
|
|| ||| |||||||||| ||| ||||| ||||||||||||||||| |
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|
| T |
38081609 |
atcatggcctccagattcgaacccgtagtgggggccatgactttgaggg |
38081657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 134 - 469
Target Start/End: Original strand, 38085749 - 38086093
Alignment:
| Q |
134 |
ctattctactaattgctctcttattttcatatacatcttctgcaattgatactagtac----ac--atggagaaaat---ttccttcaatgtctctatag |
224 |
Q |
| |
|
||||| ||||||||||| | |||||||||| ||||||||| ||||||| ||||| ||| || ||| ||| ||| |||||||||||||||||||| |
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|
| T |
38085749 |
ctattgtactaattgctattttattttcatttacatcttcagcaattggtactactactactactaatgaagataatagcttccttcaatgtctctatag |
38085848 |
T |
|
| Q |
225 |
ttattcacataactcaacttcaatctctgaagttgtgtacaccaaaaccaattcctcttactcatcgatactcaaatttacaactcaaaatctcagattt |
324 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||| ||||||| || ||| |||| |||||| ||||| |||||||||||||||||||| |
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|
| T |
38085849 |
ctattcacataactccacttcaatctctaaagttgtgtacaccaaagccaattcatcatacacatcaatactccaattttcaactcaaaatctcagattt |
38085948 |
T |
|
| Q |
325 |
gcatccaacacaacacctaaacctcttgtcattatcacacctaaacagatttcccaaattcaaacaaccataatctgttcacaaatccacaacctgcaga |
424 |
Q |
| |
|
||| |||||| |||||| ||||| ||||| ||| |||||||| | | |||||||| |||||| ||||| |||| ||||| ||| ||||| |||||||| |
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|
| T |
38085949 |
gcaaccaacaaaacaccaaaaccacttgtaattgtcacacctctagaaatttcccatattcaagcaaccgtaatttgttcccaataccacagcctgcaga |
38086048 |
T |
|
| Q |
425 |
ttcgaatccgaagtggtggccatgactttgagggtcggtcctatg |
469 |
Q |
| |
|
||||||| || || || || || ||||||||||||| ||| |||| |
|
|
| T |
38086049 |
ttcgaattcgcagcggcggtcacgactttgagggtctgtcttatg |
38086093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 474
Target Start/End: Original strand, 37953867 - 37953922
Alignment:
| Q |
419 |
tgcagattcgaatccgaagtggtggccatgactttgagggtcggtcctatgcttct |
474 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| || |||| |||||||| |||| |
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|
| T |
37953867 |
tgcagattcgaatccgaagtggtggccacgactacgaaggtctgtcctatgtttct |
37953922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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