View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13706_high_8 (Length: 474)
Name: NF13706_high_8
Description: NF13706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13706_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 258 - 455
Target Start/End: Complemental strand, 47417608 - 47417411
Alignment:
| Q |
258 |
aattcaaattgaaattctgctgtttattcgtccaatgatcttcaattgaatttctaggacgaaattgttttaagaggagtaaaatgcaacggcccataat |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
47417608 |
aattcaaattgaaattctgctgtttattcgtccaatgatcttcaattgaatttctaggacgaaattgttttaagaggagtaaaatgtaacggcccataat |
47417509 |
T |
|
| Q |
358 |
tttgnnnnnnncctagttcgatgctaggttaagcaaccaaaactaaaaccctcaatttgtacatttcgcctatattctgtcatcttttctgccataag |
455 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47417508 |
tttgtctttttcctagttcgatgcaaggttaagcaaccaaaactaaaaccctcaatttgtacatttcgcctatattctgtcatcttttctgccataag |
47417411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 131 - 218
Target Start/End: Complemental strand, 47417700 - 47417613
Alignment:
| Q |
131 |
ccaattggggtccttgtacactccaagtcgttatctttgcgcttgaacttgaattagtaatatccgtcgtatttccatttgtgccaaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
47417700 |
ccaattggggtccttgtacactccaagtcgttatctttgcgcttgaacttgaattagtaatgtccgtggtatttccatttgtgccaaa |
47417613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 174 - 333
Target Start/End: Complemental strand, 47406975 - 47406819
Alignment:
| Q |
174 |
tgaacttgaattagtaatatccgtcgtatttccatttgtgccaaaattgaatgcagttcttaacacttcctaaacttaatttctaattcaaattgaaatt |
273 |
Q |
| |
|
||||||||| ||||||||||| ||| |||||||||||||||||||| ||||| || ||||||| ||| ||||||| |||||||||||||||||||||| |
|
|
| T |
47406975 |
tgaacttgagttagtaatatcagtcatatttccatttgtgccaaaactgaatccaattcttaatgattcgtaaacttcatttctaattcaaattgaaatt |
47406876 |
T |
|
| Q |
274 |
ctgctgtttattcgtccaatgatcttcaattgaatttctaggacgaaattgttttaagag |
333 |
Q |
| |
|
| |||||||||| ||||| || |||||||||||||| |||| | |||| ||||||||| |
|
|
| T |
47406875 |
cagctgtttatttgtccagtg---ttcaattgaatttcgaggatggaattattttaagag |
47406819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 47417820 - 47417764
Alignment:
| Q |
11 |
cacagatattggttatgagtccaagaaccagacttagagtagggctctagttcctac |
67 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47417820 |
cacagatattggttgtgagtccaagaaccagacttagagtagggctctagttcctac |
47417764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University