View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13706_low_10 (Length: 446)
Name: NF13706_low_10
Description: NF13706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13706_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 179 - 429
Target Start/End: Original strand, 37950498 - 37950746
Alignment:
| Q |
179 |
ataataaggcttgattctttaattatgaagatagaggaaatatgtgtcgaagattttctgcataattttattttttgatgaatttctacataggtgagag |
278 |
Q |
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| T |
37950498 |
ataataaggcttgatcctttaattatgaagatagaggaaatatgtgtcgaagattttctgcataattttattttttgatgaatttctacataggtgagag |
37950597 |
T |
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| Q |
279 |
taaaaggttgtagaaggtttgaccnnnnnnnnnnnnnnnnnngttgtagaaggtcatttgcagaggtctaccggtggatccttattttttggatccatat |
378 |
Q |
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| T |
37950598 |
taaaaggttgtagaaggtttgacc--aaaaaaataaaaaaaagttgtagaaggtcatttgcataggtctaccggtggatccttattttttggatccatat |
37950695 |
T |
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| Q |
379 |
cagggctccccttttacaagtatgaggatgaggataagttgagttgagtgg |
429 |
Q |
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| T |
37950696 |
cagggctccccttttacaagcatgaggatgaggacaagttgagttgagtgg |
37950746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 37950336 - 37950457
Alignment:
| Q |
12 |
atgaaacgaaaaatgatcctttcgattcgtagtgacactgccactgtgcaaaaacaacaacaacggtcataaacattttacctttatagatatgcaaaag |
111 |
Q |
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| T |
37950336 |
atgaaacgaaaaatgatccttccgattcgtagtgacactgccactgtgcaaaaacaacaacaacggtcataaacattttacatttatagatatgcaaaag |
37950435 |
T |
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| Q |
112 |
aacctcaacaacctcaacttaa |
133 |
Q |
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| T |
37950436 |
aacctcaacaacctcaacttaa |
37950457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 179 - 270
Target Start/End: Complemental strand, 10766484 - 10766393
Alignment:
| Q |
179 |
ataataaggcttgattctttaattatgaagatagaggaaatatgtgtcgaagattttctgcataattttattttttgatgaatttctacata |
270 |
Q |
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| T |
10766484 |
ataataaggttcgatcctttaattattaagatggaggaaatatctatcgaagattttctgcataattttatgttttgatgaacttctgcata |
10766393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 10766249 - 10766193
Alignment:
| Q |
322 |
ttgtagaaggtcatttgcagaggtctaccggtggatccttattttttggatccatat |
378 |
Q |
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| T |
10766249 |
ttgtagaaggtcatttgcataggtccaccaatagacccttattttttggttccatat |
10766193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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