View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13706_low_13 (Length: 418)
Name: NF13706_low_13
Description: NF13706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13706_low_13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 15 - 418
Target Start/End: Complemental strand, 24422398 - 24421996
Alignment:
| Q |
15 |
catagggattgcattgcacgtagatagatatcaacaacaaactaccagatcaccaataaaatcaaatctcaaccgtccaatcctctcttaccatccatct |
114 |
Q |
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| T |
24422398 |
catagggattgcattgcacgtagatagatatcaacaacaaactaccagatcaccaataaaatcaaatctcaaccgtccaatcctctcttaccatccatct |
24422299 |
T |
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| Q |
115 |
tagccgtccaatttcttaaatgttattggtaacgcaccaacgccgttttctccaaattttgtaacattctttctaacagaaaaaaccgtataactttctg |
214 |
Q |
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| T |
24422298 |
tagtcgtccaatttcttaaatgttattggtaacgcaccaacgc-gttttctccaaattttgtaacattctttctaacagaaaaaaccgtataactttctg |
24422200 |
T |
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| Q |
215 |
tctctatctcttccattttcaaccttaatttctgtcacattaatgttcatcttcatttcccatctttaattctctcaaaagtttccatcaaaagtctcaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24422199 |
tctctatctcttccattttcaaccttaatttctgtcacattaatgttcatcttcatttcccatctttaattctctcaaaagtttccatcaaaagtctcaa |
24422100 |
T |
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| Q |
315 |
tcatcaaaatcttattaacatttttctccattattggtgttcattgatattcgtataataacgggttttttccattaattccagctataatttcaacatt |
414 |
Q |
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| T |
24422099 |
tcatcaaaatcttataaacatttttctccattattggtgttcattgatattcgtataataacgggttttttccattaattccagctataatttcaacatt |
24422000 |
T |
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| Q |
415 |
atat |
418 |
Q |
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| T |
24421999 |
atat |
24421996 |
T |
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