View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13706_low_15 (Length: 418)

Name: NF13706_low_15
Description: NF13706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13706_low_15
NF13706_low_15
[»] chr3 (11 HSPs)
chr3 (1-261)||(43532889-43533149)
chr3 (261-400)||(43533211-43533351)
chr3 (135-257)||(43528739-43528863)
chr3 (29-136)||(43528599-43528705)
chr3 (261-400)||(43528929-43529066)
chr3 (309-400)||(43537658-43537751)
chr3 (314-400)||(43523220-43523308)
chr3 (71-136)||(43537326-43537391)
chr3 (188-257)||(43537478-43537549)
chr3 (99-133)||(43522905-43522939)
chr3 (198-257)||(43523046-43523107)


Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 43532889 - 43533149
Alignment:
Q  1 gccacagtatcaagttacaacgcttccaactaatattttacaaatttgtgtaacatacaattgnnnnnnngtaggaaaaagaagctgatgatattattct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  43532889 gccacagtatcaagttacaacgcttccaactaatattttacaaatttgtgtaacatacaattgtttttttgtaggaaaaagaagctgatgatattattct 43532988  T
Q  101 caaagcaatgggacgtgcaataaataagactgtaatctctatgcagaaaattggttagcattttctcttgttttgctactgtgatcactctgtctacttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43532989 caaagcaatgggacgtgcaataaataagactgtaatctctatgcagaaaattggttagcattttctcttgttttgctactgtgatcactctgtctacttg 43533088  T
Q  201 tttcagagaaggattgtttgttcatcagaacactcatgttggatcaactgatataaccgac 261  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  43533089 tttcagagaaggattgtttgttcatcagaacactcatattggatcaactgatataaccgac 43533149  T

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Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 261 - 400
Target Start/End: Original strand, 43533211 - 43533351
Alignment:
Q  261 ctgtcaaat-aatttatgtatatgcatgagtgtgattgnnnnnnnnccgttgtgttttacttgctcagtttggagtactcgtcatgttccgatgatcaca 359  Q
    ||||||||| ||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||| |||||||||  ||||||||||    
T  43533211 ctgtcaaattaatttatgtatatgcatgagtgtgattgttttttttccgttgtgttttacttgctcagtttggagtacccgtcatgtttggatgatcaca 43533310  T
Q  360 attactttataagagaaagagctggatacatcctccacagg 400  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  43533311 attactttataagagaaagagctggatacatcctccacagg 43533351  T

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Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 135 - 257
Target Start/End: Original strand, 43528739 - 43528863
Alignment:
Q  135 atctctatgcagaaaattggttagcattttctcttgttttgctactgtgatcactctgtctacttgtttcagagaaggattgtt--tgttcatcagaaca 232  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||  | ||||||||||||    
T  43528739 atctctatgcagaaaattggttggcattttctcttgttttgctattgtgaccgctctgtctacttgtttcagagaaggattgttggtcttcatcagaaca 43528838  T
Q  233 ctcatgttggatcaactgatataac 257  Q
    |||| ||||||||||||||||||||    
T  43528839 ctcaagttggatcaactgatataac 43528863  T

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Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 43528599 - 43528705
Alignment:
Q  29 actaatattttacaaatttgtgtaacatacaattgnnnnnnngtaggaaaaagaagctgatgatattattctcaaagcaatgggacgtgcaataaataag 128  Q
    ||||||||||||||| |||||||||| |||| |||       ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  43528599 actaatattttacaattttgtgtaacttacatttgtttttt-gtaggaaaaaggagctgatgatattgttctcaaagcaatgggacgtgcaataaataag 43528697  T
Q  129 actgtaat 136  Q
    ||||||||    
T  43528698 actgtaat 43528705  T

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Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 261 - 400
Target Start/End: Original strand, 43528929 - 43529066
Alignment:
Q  261 ctgtcaaataatttatgtatatgcatgagtgtgattgnnnnnnnnccgttgtgttttacttg--ctcagtttggag--tactcgtcatgttccgatgatc 356  Q
    |||||||||||||||||||||||||||||| |||||          ||||||||||||||||  ||||||||||||  ||||||||||||| |||||||     
T  43528929 ctgtcaaataatttatgtatatgcatgagtatgatttttt------cgttgtgttttacttgtgctcagtttggagactactcgtcatgtttcgatgatt 43529022  T
Q  357 acaattactttataagagaaagagctggatacatcctccacagg 400  Q
    ||||||||||| | | ||||||||||||||||||| ||||||||    
T  43529023 acaattactttgtcaaagaaagagctggatacatcgtccacagg 43529066  T

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Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 309 - 400
Target Start/End: Original strand, 43537658 - 43537751
Alignment:
Q  309 ttgtgttttacttgctcagtttggag--tactcgtcatgttccgatgatcacaattactttataagagaaagagctggatacatcctccacagg 400  Q
    ||||||||||||||||||||||||||  ||||||||||||| | ||||||||||||||  | | | ||||||||||||||||||||||||||||    
T  43537658 ttgtgttttacttgctcagtttggagactactcgtcatgtttcaatgatcacaattacgctgtcaaagaaagagctggatacatcctccacagg 43537751  T

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Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 314 - 400
Target Start/End: Original strand, 43523220 - 43523308
Alignment:
Q  314 ttttacttgctcagtttggag--tactcgtcatgttccgatgatcacaattactttataagagaaagagctggatacatcctccacagg 400  Q
    |||||||||| |||||||||   ||||||||||||| | ||||||||||||||||| | | ||||||||||||||||||||||||||||    
T  43523220 ttttacttgcgcagtttggaaactactcgtcatgtttcaatgatcacaattactttgtcaaagaaagagctggatacatcctccacagg 43523308  T

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Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 43537326 - 43537391
Alignment:
Q  71 gtaggaaaaagaagctgatgatattattctcaaagcaatgggacgtgcaataaataagactgtaat 136  Q
    ||||||||||| | ||||||| ||| || |||||||||||||||||||||||||||||||||||||    
T  43537326 gtaggaaaaaggatctgatgaaattgttgtcaaagcaatgggacgtgcaataaataagactgtaat 43537391  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 188 - 257
Target Start/End: Original strand, 43537478 - 43537549
Alignment:
Q  188 ctctgtctacttgtttcagagaaggattgtt--tgttcatcagaacactcatgttggatcaactgatataac 257  Q
    |||| ||||||||||||||||||||||||||  | | ||||||||||||||  |||||||||||||||||||    
T  43537478 ctctttctacttgtttcagagaaggattgttggtctgcatcagaacactcaaattggatcaactgatataac 43537549  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 133
Target Start/End: Original strand, 43522905 - 43522939
Alignment:
Q  99 ctcaaagcaatgggacgtgcaataaataagactgt 133  Q
    |||||||||||||||||||| ||||||||||||||    
T  43522905 ctcaaagcaatgggacgtgcgataaataagactgt 43522939  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 257
Target Start/End: Original strand, 43523046 - 43523107
Alignment:
Q  198 ttgtttcagagaaggattgtttgtt--catcagaacactcatgttggatcaactgatataac 257  Q
    ||||||||||||||||||||| ||   ||||||||||||  | |||||||||||||||||||    
T  43523046 ttgtttcagagaaggattgttggtctgcatcagaacactattattggatcaactgatataac 43523107  T

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