View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13706_low_2 (Length: 843)
Name: NF13706_low_2
Description: NF13706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13706_low_2 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 4e-59; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 727 - 843
Target Start/End: Complemental strand, 44911525 - 44911409
Alignment:
| Q |
727 |
cacatatcttattatgacgacgatactaagcgacatggtttcaattaatgatgctgtttcctacatcttagtttcaataatgattatacttctgataact |
826 |
Q |
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| T |
44911525 |
cacatatcttattatgacgacgatactaagcgacatggtttcaattaatgatgctgtttcctacatcttagtttcaataatgattatacttctgataact |
44911426 |
T |
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| Q |
827 |
ccacttgcaattccttt |
843 |
Q |
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| T |
44911425 |
ccacttgcaattccttt |
44911409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 44911695 - 44911625
Alignment:
| Q |
1 |
ttaaattcctgaccctctgtgatggtgtgaaataattttgataaacatgatgatgctttgaaagcataggc |
71 |
Q |
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| T |
44911695 |
ttaaattcctgaccctctgtcatggtgtgaaataattttgataaacatgatgatgctttgaaagcataggc |
44911625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 3769136 - 3769176
Alignment:
| Q |
1 |
ttaaattcctgaccctctgtgatggtgtgaaataattttga |
41 |
Q |
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| T |
3769136 |
ttaaattcctgaccccctgtgatggtgtgaaataattttga |
3769176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 669 - 705
Target Start/End: Complemental strand, 44911558 - 44911522
Alignment:
| Q |
669 |
aagactcttcaattcatgtccattttattttcacaca |
705 |
Q |
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| T |
44911558 |
aagactcttcaattcatgtccattttattttcacaca |
44911522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 3928581 - 3928541
Alignment:
| Q |
1 |
ttaaattcctgaccctctgtgatggtgtgaaataattttga |
41 |
Q |
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| T |
3928581 |
ttaaattcctgaccctctgtgatggtgtgaaataattttga |
3928541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 233 - 296
Target Start/End: Complemental strand, 1431492 - 1431428
Alignment:
| Q |
233 |
ttttggataaataacttaagtgcttatagcataaatgcttat-ttagaagtgtttatgtataagt |
296 |
Q |
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| T |
1431492 |
ttttggataaacaacttaagttcttatagcataagtgcttatcatataagtgtttatgtataagt |
1431428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 27481481 - 27481415
Alignment:
| Q |
234 |
tttggataaataacttaa----gtgcttatagcataaatgcttatt-tagaagtgtttatgtataag |
295 |
Q |
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| T |
27481481 |
tttggataaacaacttaattaggtgcttatagcataaatgtttattatataagtgtttatgtataag |
27481415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 250 - 296
Target Start/End: Original strand, 24936214 - 24936260
Alignment:
| Q |
250 |
aagtgcttatagcataaatgcttatttagaagtgtttatgtataagt |
296 |
Q |
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| T |
24936214 |
aagtgcttatagcataaaggcttatatataagtggttatgtataagt |
24936260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 6353928 - 6353891
Alignment:
| Q |
4 |
aattcctgaccctctgtgatggtgtgaaataattttga |
41 |
Q |
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| T |
6353928 |
aattcatgaccctctctgatggtgtgaaataattttga |
6353891 |
T |
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