View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13706_low_21 (Length: 360)
Name: NF13706_low_21
Description: NF13706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13706_low_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 61 - 342
Target Start/End: Complemental strand, 15761040 - 15760764
Alignment:
| Q |
61 |
tatcaaaaagggaattgactcattcatatcataactttcttcctttgcctgcgtaatgtaatatctttcatactcactccttacatcatgcatctcttct |
160 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
15761040 |
tatcaaaaagggatttgactcattcatatcataactttcttcctttgcctgcgtaatgtaatatctttcatactcactccttacatcatgcatctctcct |
15760941 |
T |
|
| Q |
161 |
cacatccatcatccactcgttctgttaaaactaactttgttgacatgacatccttgctttgccgtgtcctcttgtctcagacgcaagaacaaaaaggatc |
260 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15760940 |
cacatccatcatccactcgttctgttacaactaactttgttgacatgacatccttgctttgctgtgtcctcttgtctcagacgcaagaacaaaaaggatc |
15760841 |
T |
|
| Q |
261 |
gcgaacttcaactcccaaaattggacttgttggttacatattagatttccttgagttcaaacttccccatgttcgcaataat |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15760840 |
gcgaacttcaactcccaaaattggacttgttggttacat-----atttccttgagttcaaacttccccatgttcgcaataat |
15760764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University