View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13706_low_24 (Length: 315)
Name: NF13706_low_24
Description: NF13706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13706_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 6 - 283
Target Start/End: Original strand, 10505595 - 10505872
Alignment:
| Q |
6 |
atgaaatggaaggaatgcaaaaggtgaatatggatgatctcaagtttaaactaatttgataagtatttaatttaaatgagtaaatagctaagttgat-ac |
104 |
Q |
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| T |
10505595 |
atgaaatggaaggaatgcaaaaggtgaatatggatgatctcaagtttaaactaatttgataaatatttaatttaaatgagtaaatagctaagttgattac |
10505694 |
T |
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| Q |
105 |
ttgaaattgtagaattgtgtcaacctagtcctccacataattaatattttaaattgatcttttaaattgcaacatgttaataatcttttttcctatgttt |
204 |
Q |
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| T |
10505695 |
ttgaaattgtagaattgtgtcaacctagtcctccacataat-aatatttttaattgatcttttaaattgcaacatgttaataatcttttttcctatgttt |
10505793 |
T |
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| Q |
205 |
ggatttgttatggagtacatccttgactttatttagttttaaatttgtctcaaaaatttcccttgatttaataggttgc |
283 |
Q |
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| T |
10505794 |
ggatttgttatggagtacatccttgactttatttagttttaaatttgtctcaaaaatttcccttgatttaataggttgc |
10505872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 24404254 - 24404360
Alignment:
| Q |
12 |
tggaaggaatgcaaaaggtgaatatggatgatctcaagtttaaactaatttgat--aagtatttaatttaaatgagtaaatagctaagttgatacttgaa |
109 |
Q |
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| T |
24404254 |
tggaaggcatggaaaaggtgagtagggatgatctcaaatttagactaatttgataaaaatacttaatttaaatgattaaatatcaaagttggttattgaa |
24404353 |
T |
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| Q |
110 |
attgtag |
116 |
Q |
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| T |
24404354 |
attgtag |
24404360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 27989041 - 27988974
Alignment:
| Q |
24 |
aaaaggtgaatatggatgatctcaagtttaaactaatttgataagtatttaatttaaatgagtaaata |
91 |
Q |
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| T |
27989041 |
aaaaggtgaatatcgatgatctcaagtttagaataattcgataactattcaatttaaatgattaaata |
27988974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 176
Target Start/End: Complemental strand, 24143798 - 24143721
Alignment:
| Q |
99 |
tgatacttgaaattgtagaattgtgtcaacctagtcctccacataattaatattttaaattgatcttttaaattgcaa |
176 |
Q |
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| T |
24143798 |
tgataattgaaattgtagaattgtatcaatctagtatatcacattttcaatattataaattgatctttgaaattgcaa |
24143721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 157
Target Start/End: Original strand, 18128440 - 18128509
Alignment:
| Q |
88 |
aatagctaagttgatacttgaaattgtagaattgtgtcaacctagtcctccacataattaatattttaaa |
157 |
Q |
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| T |
18128440 |
aatacctaagtttgtacttgaaattgtagttttgtatcaacttagccctccacattattaatattctaaa |
18128509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 185
Target Start/End: Original strand, 55570869 - 55570948
Alignment:
| Q |
105 |
ttgaaattgtagaattgtgtcaacctagtcctccacataattaatattttaaattgatcttttaaattgcaacatgttaat |
185 |
Q |
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| T |
55570869 |
ttgaaattgtaggatggtatcaacctagtcct-cacattattaatatttcaaaatgatttagtgaattgcaaaatgttaat |
55570948 |
T |
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