View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13706_low_25 (Length: 308)
Name: NF13706_low_25
Description: NF13706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13706_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 38619284 - 38619058
Alignment:
| Q |
8 |
attatactataaataagtacaatgtggggcatctttcnnnnnnngtcaaattctcaccaacaaattacttgcaagtatcaaaaagtgcatctcaaccatt |
107 |
Q |
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| T |
38619284 |
attatattataaataagtacaatgtggggcatctttctttttttgtcaaattctcaccaacaagttacttgcaagtatcaaaaagtgcatctcaaccatt |
38619185 |
T |
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| Q |
108 |
caaattaaatattaatatatcaatggctaaaaagtaaacttttccatcaacggaaactctttcactcacctaccctaaatgtttaggaaggttggtatat |
207 |
Q |
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| T |
38619184 |
caaattaaatattaatatatcaatggctaaaaagtaaactttcccatcaagggaaactctttcactcacccaccctaaatgcttaggaaggttggtatat |
38619085 |
T |
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| Q |
208 |
aaaatgcagcgtgtatctctcaaattg |
234 |
Q |
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| T |
38619084 |
aaaatgcagcgtgtatctgtcaaattg |
38619058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 226 - 292
Target Start/End: Complemental strand, 38618229 - 38618163
Alignment:
| Q |
226 |
ctcaaattgttatatcttggaacacgaattggttacagatcagtttttatactttgttgcttccatg |
292 |
Q |
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| T |
38618229 |
ctcaaattgttatatcttggaacacgaattggttacagatcagtttttatactttgttgtttccatg |
38618163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 52 - 188
Target Start/End: Original strand, 20644265 - 20644401
Alignment:
| Q |
52 |
gtcaaattctcaccaacaaattacttgcaagtatcaaaaagtgcatctcaaccattcaaattaaatattaatatatcaatggctaaaaagtaaacttttc |
151 |
Q |
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| T |
20644265 |
gtcaaattctcaccaacaagttacttccaagtatcaaaaagtgcatctcaaccattcaaattaaatattaacatatcaatggataaaaagtaaactttcc |
20644364 |
T |
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| Q |
152 |
catcaacggaaactctttcactcacctaccctaaatg |
188 |
Q |
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| T |
20644365 |
catcaagggaaactctttcactcacccatcctaaatg |
20644401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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