View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13706_low_26 (Length: 306)

Name: NF13706_low_26
Description: NF13706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13706_low_26
NF13706_low_26
[»] chr1 (3 HSPs)
chr1 (48-289)||(35583265-35583500)
chr1 (225-273)||(1815306-1815354)
chr1 (225-272)||(43492457-43492504)
[»] chr6 (1 HSPs)
chr6 (225-289)||(16766757-16766821)
[»] chr5 (1 HSPs)
chr5 (225-272)||(7677765-7677812)
[»] chr3 (1 HSPs)
chr3 (225-272)||(40993298-40993345)
[»] chr2 (1 HSPs)
chr2 (225-272)||(2438682-2438729)
[»] chr7 (2 HSPs)
chr7 (225-258)||(7197274-7197307)
chr7 (228-272)||(8234198-8234242)
[»] scaffold0053 (1 HSPs)
scaffold0053 (225-273)||(8847-8895)
[»] chr4 (2 HSPs)
chr4 (225-289)||(30982813-30982877)
chr4 (225-273)||(34306766-34306814)


Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 48 - 289
Target Start/End: Complemental strand, 35583500 - 35583265
Alignment:
Q  48 acaaacactgtctttaattcttacaagggccttgggatttatatactttccaaaagttaggcatcattaaatagatgataacgtcctatgaatcacggtc 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  35583500 acaaacactgtctttaattcttacaagggccttgggatttatatattttccaaaagttaggcatcattaaatagatggtaacgtcctatgaatcacggtc 35583401  T
Q  148 acggacatccgacacggacactgacactgacacgctgacaccacttaattaagtctaatcatacttgtcagtgttgttgtcggtgtctgacacaacacat 247  Q
    ||||||||||||||||      || || ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35583400 acggacatccgacacg------gagaccgacacggcgacaccacttaattaagtctaatcatacttgtcagtgttgttgtcggtgtctgacacaacacat 35583307  T
Q  248 gtccgacaccgtgtcacgcctaatctatagaatgtctgtgct 289  Q
    | ||||||| ||||||||||||||||||||||||||||||||    
T  35583306 gcccgacactgtgtcacgcctaatctatagaatgtctgtgct 35583265  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 1815306 - 1815354
Alignment:
Q  225 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatct 273  Q
    |||||||||| ||||| ||||||||||||||||| | ||||||||||||    
T  1815306 tgtcggtgtccgacacgacacatgtccgacaccgggacacgcctaatct 1815354  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 272
Target Start/End: Complemental strand, 43492504 - 43492457
Alignment:
Q  225 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 272  Q
    |||||||||| |||||||||||||||||||||||   |||||||||||    
T  43492504 tgtcggtgtcagacacaacacatgtccgacaccggcacacgcctaatc 43492457  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 16766757 - 16766821
Alignment:
Q  225 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatctatagaatgtctgtgct 289  Q
    |||||||||| |||||||||| |||||||||||| | |||||||||||   |||||||| |||||    
T  16766757 tgtcggtgtcggacacaacacgtgtccgacaccgggacacgcctaatccgaagaatgtccgtgct 16766821  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 272
Target Start/End: Original strand, 7677765 - 7677812
Alignment:
Q  225 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 272  Q
    ||||||||||||||||  |||||||||||||||| | |||||||||||    
T  7677765 tgtcggtgtctgacacgtcacatgtccgacaccgggacacgcctaatc 7677812  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 272
Target Start/End: Complemental strand, 40993345 - 40993298
Alignment:
Q  225 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 272  Q
    |||||||||| ||||| ||||||||||||||||| | |||||||||||    
T  40993345 tgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatc 40993298  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 272
Target Start/End: Complemental strand, 2438729 - 2438682
Alignment:
Q  225 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 272  Q
    |||||||||| ||||| ||||||||||||||||| | |||||||||||    
T  2438729 tgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatc 2438682  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 258
Target Start/End: Complemental strand, 7197307 - 7197274
Alignment:
Q  225 tgtcggtgtctgacacaacacatgtccgacaccg 258  Q
    |||||||||| |||||||||||||||||||||||    
T  7197307 tgtcggtgtcggacacaacacatgtccgacaccg 7197274  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 8234198 - 8234242
Alignment:
Q  228 cggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 272  Q
    ||||||| ||||| ||||||||||||||||| | |||||||||||    
T  8234198 cggtgtcggacacgacacatgtccgacaccgagacacgcctaatc 8234242  T

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Target: scaffold0053 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 8847 - 8895
Alignment:
Q  225 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatct 273  Q
    |||||||||| ||||| |||| |||||||||||| | ||||||||||||    
T  8847 tgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatct 8895  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 30982877 - 30982813
Alignment:
Q  225 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatctatagaatgtctgtgct 289  Q
    |||||||||| ||||| |||| |||||||||||| | ||||||||||| | ||| |||| |||||    
T  30982877 tgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccaaagagtgtccgtgct 30982813  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 34306814 - 34306766
Alignment:
Q  225 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatct 273  Q
    |||||||||| ||||| |||| |||||||||||| | ||||||||||||    
T  34306814 tgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatct 34306766  T

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