View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13706_low_27 (Length: 303)
Name: NF13706_low_27
Description: NF13706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13706_low_27 |
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| [»] chr3 (7 HSPs) |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 303
Target Start/End: Complemental strand, 43533615 - 43533328
Alignment:
| Q |
17 |
agttactatatatttagcactttgccgtgaccccaaatcttacggtaatggctaggnnnnnnnn-tgcttagcagactatagttgtactgattatatata |
115 |
Q |
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| T |
43533615 |
agttactatatatttagcactttgccgtgaccccaaatcttacggtaatggctaggaaaaaaaaatgcttagcagactatagttgcactgattatatata |
43533516 |
T |
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| Q |
116 |
caaataaactttgcgcaagaagtcatgaagttcgtaatttatgaaacgaactactagatcgatcttaattagtgatcaagtagtttgcttgaaaaataac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43533515 |
caaataaactttgcgcaagaagtcatgaagttcgtaatttatgaaacgaactactagatcgatcttaattagtgatcaagtagtttgcttgaaaaataac |
43533416 |
T |
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| Q |
216 |
taagcctattaagagataaggcatctaattaacagacatcatgcaatatcatgaaagttcataccctgtggaggatgtatccagctct |
303 |
Q |
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| T |
43533415 |
taagcctattaagagataaggcatctaattaacagacatcatgcaatatcatgaaagttcataccctgtggaggatgtatccagctct |
43533328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 165 - 249
Target Start/End: Complemental strand, 43529200 - 43529116
Alignment:
| Q |
165 |
actactagatcgatcttaattagtgatcaagtagtttgcttgaaaaataactaagcctattaagagataaggcatctaattaaca |
249 |
Q |
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| T |
43529200 |
actactaggtcgatcttaattagtgatcaagtagtttgcttgaaaaataactaagcctattaagagataaggcatctaattaaca |
43529116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 254 - 303
Target Start/End: Complemental strand, 43529092 - 43529043
Alignment:
| Q |
254 |
tcatgcaatatcatgaaagttcataccctgtggaggatgtatccagctct |
303 |
Q |
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| T |
43529092 |
tcatgcaatatcatgaaagttcataccctgtggacgatgtatccagctct |
43529043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 254 - 303
Target Start/End: Complemental strand, 43537777 - 43537728
Alignment:
| Q |
254 |
tcatgcaatatcatgaaagttcataccctgtggaggatgtatccagctct |
303 |
Q |
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| T |
43537777 |
tcatgcaatatcatgaaagtccataccctgtggaggatgtatccagctct |
43537728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 43523325 - 43523285
Alignment:
| Q |
263 |
atcatgaaagttcataccctgtggaggatgtatccagctct |
303 |
Q |
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| T |
43523325 |
atcatgaaagttcataccctgtggaggatgtatccagctct |
43523285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 43537987 - 43537860
Alignment:
| Q |
21 |
actatatatttagcactttgccgtgaccccaaatcttacgg-----taatggctaggnnnnnnnntgcttagcagactatagttgtactgattatatata |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||| | || |||||| ||||||| ||||||||| ||||||||||||| | | |
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| T |
43537987 |
actatatatttagcactttgccgtgaccccaaatcttacagaagtacaacagctagg--aaaaaatgcttagtagactatagctgtactgattataaaaa |
43537890 |
T |
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| Q |
116 |
caaataaactttgcgcaagaagtcatgaag |
145 |
Q |
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| T |
43537889 |
caaataaactttgcacaagtagtcatgaag |
43537860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 43537855 - 43537796
Alignment:
| Q |
193 |
aagtagtttgcttgaaaaataactaagcctattaagagataaggcatctaattaacagacat |
254 |
Q |
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| T |
43537855 |
aagtagtttgcttgaaaaa--actaagcctatcaagagataaggcatctgattaacaaacat |
43537796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 18829 - 18886
Alignment:
| Q |
177 |
atcttaattagtgatcaagtagtttgcttgaaaaataactaagcctattaagagataa |
234 |
Q |
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||||||| || | ||||| |||||||| | ||||||||||||||||||||| |||||| |
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| T |
18829 |
atcttaactaattatcaactagtttgcattaaaaataactaagcctattaaaagataa |
18886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 22068418 - 22068475
Alignment:
| Q |
177 |
atcttaattagtgatcaagtagtttgcttgaaaaataactaagcctattaagagataa |
234 |
Q |
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| T |
22068418 |
atcttaactaattatcaactagtttgcattaaaaataactaagcctattaaaagataa |
22068475 |
T |
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