View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13706_low_28 (Length: 303)

Name: NF13706_low_28
Description: NF13706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13706_low_28
NF13706_low_28
[»] chr7 (2 HSPs)
chr7 (5-287)||(16566868-16567150)
chr7 (5-287)||(16598512-16598794)
[»] scaffold0078 (3 HSPs)
scaffold0078 (1-287)||(3212-3499)
scaffold0078 (75-287)||(22466-22678)
scaffold0078 (79-287)||(57755-57960)
[»] scaffold0184 (2 HSPs)
scaffold0184 (79-287)||(14884-15089)
scaffold0184 (178-287)||(1825-1934)


Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 5 - 287
Target Start/End: Complemental strand, 16567150 - 16566868
Alignment:
Q  5 aaggaaacaaccaataaacacctaactagaaacatcaaaataacaaaaataaatatcaagagcaatattattttcctaaatcccaccaatcttctccaat 104  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16567150 aaggaaacaaccaatagacacctaactagaaacatcaaaataacaaaaataaatattaagagcaatattattttcctaaatcccaccaatcttctccaat 16567051  T
Q  105 tgagtagccaagtgtgaaatagtttgtattgaagaaccatctttaactttcaatgccatagcagcagattctcttaaactcttcattctatcacgcattg 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16567050 tgagtagccaagtgtgaaatagtttgtattgaagaaccatctttggcattcaatgccatagcagcagcttctcttaaactcttcattctatcacgcattg 16566951  T
Q  205 ccataccttcttccccttccataacacacttaatcatctttgcaattttctccttttccacaatgtcatcatcttcaaatttc 287  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16566950 ccatgccttcttccccttccataacagacttaatcatctttgcaattttctccttttccacaatgtcatcatcttcaaatttc 16566868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 5 - 287
Target Start/End: Original strand, 16598512 - 16598794
Alignment:
Q  5 aaggaaacaaccaataaacacctaactagaaacatcaaaataacaaaaataaatatcaagagcaatattattttcctaaatcccaccaatcttctccaat 104  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16598512 aaggaaacaaccaatagacacctaactagaaacatcaaaataacaaaaataaatattaagagcaatattattttcctaaatcccaccaatcttctccaat 16598611  T
Q  105 tgagtagccaagtgtgaaatagtttgtattgaagaaccatctttaactttcaatgccatagcagcagattctcttaaactcttcattctatcacgcattg 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16598612 tgagtagccaagtgtgaaatagtttgtattgaagaaccatctttggcattcaatgccatagcagcagcttctcttaaactcttcattctatcacgcattg 16598711  T
Q  205 ccataccttcttccccttccataacacacttaatcatctttgcaattttctccttttccacaatgtcatcatcttcaaatttc 287  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16598712 ccatgccttcttccccttccataacagacttaatcatctttgcaattttctccttttccacaatgtcatcatcttcaaatttc 16598794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 3499 - 3212
Alignment:
Q  1 aattaaggaaacaaccaataaacacctaactagaaacatcaaaataacaaaaataaat-atcaagagcaatattattttcctaaatcccaccaatcttct 99  Q
    |||||||||||||||||||| ||||  || ||||||||||||||||| ||||  |||| || |||||||||| |||||| |||||||| |||||| || |    
T  3499 aattaaggaaacaaccaatagacacaaaaatagaaacatcaaaataataaaagaaaattattaagagcaatactatttttctaaatcctaccaatgtttt 3400  T
Q  100 ccaattgagtagccaagtgtgaaatagtttgtattgaagaaccatctttaactttcaatgccatagcagcagattctcttaaactcttcattctatcacg 199  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3399 ccaattgagtagccaagtgtgacatagtttgaattgaagaaccatctttggctttcaatgccatagcagcagattctcttaaactcttcattctatcacg 3300  T
Q  200 cattgccataccttcttccccttccataacacacttaatcatctttgcaattttctccttttccacaatgtcatcatcttcaaatttc 287  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3299 cattgcaataccttcttccccttccataacacacttaatcatctttgcaattttctccttttccacaatctcatcatcttcaaatttc 3212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 75 - 287
Target Start/End: Complemental strand, 22678 - 22466
Alignment:
Q  75 ttttcctaaatcccaccaatcttctccaattgagtagccaagtgtgaaatagtttgtattgaagaaccatctttaactttcaatgccatagcagcagatt 174  Q
    ||||||||||||||||||||| | |||| |||| ||||||||||||| | |||||| ||||||||||||||||| || ||||||||| ||| |||| | |    
T  22678 ttttcctaaatcccaccaatcatttccatttgactagccaagtgtgagagagtttgaattgaagaaccatctttgacattcaatgccttagtagcataat 22579  T
Q  175 ctcttaaactcttcattctatcacgcattgccataccttcttccccttccataacacacttaatcatctttgcaattttctccttttccacaatgtcatc 274  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||  ||||||||||| |||||||| ||||| |||||    
T  22578 ctcttaaactcttcattctatcacgcattgccttaccttcttccccttccatcaaacacttaatcacatttgcaattttatccttttctacaatctcatc 22479  T
Q  275 atcttcaaatttc 287  Q
    |||||||||||||    
T  22478 atcttcaaatttc 22466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 79 - 287
Target Start/End: Complemental strand, 57960 - 57755
Alignment:
Q  79 cctaaatcccaccaatcttctccaattgagtagccaagtgtgaaatagtttgtattgaagaaccatctttaactttcaatgccatagcagcagattctct 178  Q
    ||||| |||||||||  || ||| ||||| ||||||||||||| | ||| ||||||||||||||| | |   |||| | |||  |||||||| | ||| |    
T  57960 cctaagtcccaccaaaattttcccattgactagccaagtgtgacaaagtctgtattgaagaaccaccat---ctttaagtgcattagcagcataatcttt 57864  T
Q  179 taaactcttcattctatcacgcattgccataccttcttccccttccataacacacttaatcatctttgcaattttctccttttccacaatgtcatcatct 278  Q
    ||||||||||||||| |||||||||  | ||||||||||||||||||| | |||||||||||  ||||||||||  |||||||| ||||| |||||||||    
T  57863 taaactcttcattctttcacgcattctcttaccttcttccccttccatcaaacacttaatcacatttgcaatttcatccttttctacaatctcatcatct 57764  T
Q  279 tcaaatttc 287  Q
    |||||||||    
T  57763 tcaaatttc 57755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 79 - 287
Target Start/End: Original strand, 14884 - 15089
Alignment:
Q  79 cctaaatcccaccaatcttctccaattgagtagccaagtgtgaaatagtttgtattgaagaaccatctttaactttcaatgccatagcagcagattctct 178  Q
    ||||| |||||||||  || ||| ||||| ||||||||||||| | ||| ||||||||||||||| | |   |||| | |||  |||||||| | ||| |    
T  14884 cctaagtcccaccaaaattttcccattgactagccaagtgtgacaaagtctgtattgaagaaccaccat---ctttaagtgcattagcagcataatcttt 14980  T
Q  179 taaactcttcattctatcacgcattgccataccttcttccccttccataacacacttaatcatctttgcaattttctccttttccacaatgtcatcatct 278  Q
    ||||||||||||||| |||||||||  | ||||||||||||||||||| | |||||||||||  ||||||||||  |||||||| ||||| |||||||||    
T  14981 taaactcttcattctttcacgcattctcttaccttcttccccttccatcaaacacttaatcacatttgcaatttcatccttttctacaatctcatcatct 15080  T
Q  279 tcaaatttc 287  Q
    |||||||||    
T  15081 tcaaatttc 15089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 178 - 287
Target Start/End: Complemental strand, 1934 - 1825
Alignment:
Q  178 ttaaactcttcattctatcacgcattgccataccttcttccccttccataacacacttaatcatctttgcaattttctccttttccacaatgtcatcatc 277  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||| | |||||||||||  |||||| |||| |||||||||||||| ||||||||    
T  1934 ttaaactcttcattctatcacgcattgttttaccttcttccccttccatcaaacacttaatcacatttgcagttttatccttttccacaatctcatcatc 1835  T
Q  278 ttcaaatttc 287  Q
    ||||||||||    
T  1834 ttcaaatttc 1825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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