View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13706_low_34 (Length: 271)
Name: NF13706_low_34
Description: NF13706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13706_low_34 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 35857457 - 35857207
Alignment:
| Q |
18 |
gacatgacctctagcaattctaccattatagtagttattcaatatcttcatgacttaatagcatcctatgatattactgaccttattacagtaaaagaat |
117 |
Q |
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| T |
35857457 |
gacatgacctctagcaattctatcattatagt---tattcaatattttcatgactgaatagcatcctatgatattactgaccttattacagtaaaagaat |
35857361 |
T |
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| Q |
118 |
tgttatgggacacgttgtctgtggagcatttcgccaacaaaattaaacgcaatgttaatttcaaacagagctttccatttgtctggtatataaaaacatt |
217 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
35857360 |
tgttatgggacaccttgtgtgtggagcatttcgccaacaaaattaaacgcaatgttaatttcaaactgagctttccatttgttaggtatataaaaacatt |
35857261 |
T |
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| Q |
218 |
gtcttgaacgttcttcaatcattgccgtaattagcacacgaaaaaataaatcat |
271 |
Q |
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| T |
35857260 |
atcttgaacgttcttcaatcattgccgtaattagcacacgaaaaaataaatcat |
35857207 |
T |
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