View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13706_low_35 (Length: 259)
Name: NF13706_low_35
Description: NF13706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13706_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 2592758 - 2592531
Alignment:
| Q |
19 |
tctttgttgcttctccccttcaaacatgaaaaacttgatattgtttatttagttgatttcatgtgaagaatcaacaattatgttcgttggtcttctttgt |
118 |
Q |
| |
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||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||| | |
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| T |
2592758 |
tctttgttgcttc---ccttaaaacattaaaaacttgatattgtttatttagttgatttcatgtgaagaatcaataattatgttggttggtcttattttt |
2592662 |
T |
|
| Q |
119 |
agacttatcaaagagtaatatgttccacttggccctttagacaacaaagatgaatgtgttcctttctcaacaacacttcccttatccaaaacagcaatca |
218 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2592661 |
agacttatcaaagagtaatatgctccacttggccctttagacaacaaagatgaatgtgttcctttctcaataacacttcccttatccaaaacagcaatca |
2592562 |
T |
|
| Q |
219 |
aatcacagttttggatagtactcaacctatg |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
2592561 |
aatcacagttttggatagtactcaacctatg |
2592531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 2624304 - 2624075
Alignment:
| Q |
19 |
tctttgttgcttctccccttcaaacatgaaaaacttgatattgtttatttagttgatttcatgtgaagaatcaacaattatgttcgttggtcttctttgt |
118 |
Q |
| |
|
|||||||| |||||||| ||||||||| |||||| ||||||||||||||| || |||||||||| |||||||||||||||||| ||||||||| ||||| |
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| T |
2624304 |
tctttgttacttctccc-ttcaaacattaaaaacaagatattgtttatttatttaatttcatgtggagaatcaacaattatgttggttggtcttttttgt |
2624206 |
T |
|
| Q |
119 |
agacttatcaaagagtaatatgttccacttggccctttagacaacaaagatgaatgtgttcctttctcaacaacacttcccttatccaaaacagcaatca |
218 |
Q |
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|
|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2624205 |
agacttatcaaagagtaatatgctccacttggccctttagacaacaaggatgaatgtgttccattctcaacaacacttcccttatccaaaacagcaatca |
2624106 |
T |
|
| Q |
219 |
aatcacagttttggatagtactcaacctatg |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
2624105 |
aatcacagttttggatagtactcaacctatg |
2624075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 2671885 - 2672114
Alignment:
| Q |
19 |
tctttgttgcttctccccttcaaacatgaaaaacttgatattgtttatttagttgatttcatgtgaagaatcaacaattatgttcgttggtcttctttgt |
118 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||| ||||||||||||||| |
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| T |
2671885 |
tctttgttgcttctccc-ttcaaccatgaaaaacttgatattgtttatttagttgatttcatgtgaagaatcaatagtaatgttggttggtcttctttgt |
2671983 |
T |
|
| Q |
119 |
agacttatcaaagagtaatatgttccacttggccctttagacaacaaagatgaatgtgttcctttctcaacaacacttcccttatccaaaacagcaatca |
218 |
Q |
| |
|
||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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|
| T |
2671984 |
agacttaccaaagagtaataagctccacttggccctttagacaacaaagatgaatgtgttcctttctcaacaacacttcccttgtctaaaacagcaatca |
2672083 |
T |
|
| Q |
219 |
aatcacagttttggatagtactcaacctatg |
249 |
Q |
| |
|
|||| || ||||| ||||||||||||||||| |
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|
| T |
2672084 |
aatcgcaattttgtatagtactcaacctatg |
2672114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 49 - 249
Target Start/End: Complemental strand, 2440785 - 2440585
Alignment:
| Q |
49 |
aaacttgatattgtttatttagttgatttcatgtgaagaatcaacaattatgttcgttggtcttctttgtagacttatcaaagagtaatatgttccactt |
148 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| |||||||| ||||||| || ||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
2440785 |
aaacttgatcatgtttatttagttaatttcatggcaagaatcagcaattatattgtttggtcttctttgtagacttaccaaagagtaatatgctccactt |
2440686 |
T |
|
| Q |
149 |
ggccctttagacaacaaagatgaatgtgttcctttctcaacaacacttcccttatccaaaacagcaatcaaatcacagttttggatagtactcaacctat |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2440685 |
ggccctttagacaacaaagatgaatgtgttcctttctcaacaacaattcccttatccaaaacagcaatcaaatcacagttttgaatagtactcaacctat |
2440586 |
T |
|
| Q |
249 |
g |
249 |
Q |
| |
|
| |
|
|
| T |
2440585 |
g |
2440585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 2568510 - 2568739
Alignment:
| Q |
19 |
tctttgttgcttctccccttcaaacatgaaaaacttgatattgtttatttagttgatttcatgtgaagaatcaacaattatgttcgttggtcttctttgt |
118 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| || ||||||||||||| |
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|
| T |
2568510 |
tctttcttgcttctccc-ttcaaacatgaaaaacttagtattgtttatttagttgatttcatgtgaagaatacgaaattaaattgtttggtcttctttgc |
2568608 |
T |
|
| Q |
119 |
agacttatcaaagagtaatatgttccacttggccctttagacaacaaagatgaatgtgttcctttctcaacaacacttcccttatccaaaacagcaatca |
218 |
Q |
| |
|
||||||| |||||||||||| | |||||||||||||| ||||| ||| ||||||||||||||||||||||||| | |||||||||||||||||||||| |
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|
| T |
2568609 |
agacttaccaaagagtaataagcaccacttggcccttttgacaataaatttgaatgtgttcctttctcaacaacaatgcccttatccaaaacagcaatca |
2568708 |
T |
|
| Q |
219 |
aatcacagttttggatagtactcaacctatg |
249 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| |
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|
| T |
2568709 |
aatcacaattttgtatagtactcaacctatg |
2568739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 59 - 249
Target Start/End: Original strand, 2640764 - 2640954
Alignment:
| Q |
59 |
ttgtttatttagttgatttcatgtgaagaatcaacaattatgttcgttggtcttctttgtagacttatcaaagagtaatatgttccacttggccctttag |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| | || |||||||||||||||||||||| ||||||||||| ||||||||| || || |
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|
| T |
2640764 |
ttgtttatttagttgatttcatgtgaagaaccaacaattgtattggttggtcttctttgtagacttactaaagagtaataaactccacttggtcccaaag |
2640863 |
T |
|
| Q |
159 |
acaacaaagatgaatgtgttcctttctcaacaacacttcccttatccaaaacagcaatcaaatcacagttttggatagtactcaacctatg |
249 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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|
| T |
2640864 |
acaacaaagatgaatgtgttcctttttcaacaacaatccccttatccaaaacagcaatcaaatcacaattttgtatagtactcaacctatg |
2640954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 21 - 249
Target Start/End: Original strand, 2596070 - 2596298
Alignment:
| Q |
21 |
tttgttgcttctccccttcaaacatgaaaaacttgatattgtttatttagttgatttcatgtgaagaatcaacaattatgttcgttg--gtcttctttgt |
118 |
Q |
| |
|
||||| ||||||||| |||||||||| ||| || || ||||||||||||||||||||||||||||||||||||||| | || ||| ||||||||||| |
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|
| T |
2596070 |
tttgtagcttctccc-ttcaaacatggaaa-ctggaccttgtttatttagttgatttcatgtgaagaatcaacaattgtattggttatagtcttctttgt |
2596167 |
T |
|
| Q |
119 |
agacttatcaaagagtaatatgttccacttggccctttagacaacaaagatgaatgtgttcctttctcaacaacacttcccttatccaaaacagcaatca |
218 |
Q |
| |
|
||||||| |||||||||||| ||||||||| || ||| |||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||| |
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|
| T |
2596168 |
agacttaccaaagagtaataaactccacttggtcccaaagataacaaagacgaatgtgttcctttctcaacaacaattcccttatccaagacagcaatca |
2596267 |
T |
|
| Q |
219 |
aatcacagttttggatagtactcaacctatg |
249 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| |
|
|
| T |
2596268 |
aatcacaattttgtatagtactcaacctatg |
2596298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 106 - 249
Target Start/End: Complemental strand, 2451450 - 2451307
Alignment:
| Q |
106 |
tggtcttctttgtagacttatcaaagagtaatatgttccacttggccctttagacaacaaagatgaatgtgttcctttctcaacaacacttcccttatcc |
205 |
Q |
| |
|
|||||||||||||||||||| || ||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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|
| T |
2451450 |
tggtcttctttgtagacttaccatagagtaataagctccacttggtcctttagacaacaaagatgaatgtgttcctttctcaataacactacccttatcc |
2451351 |
T |
|
| Q |
206 |
aaaacagcaatcaaatcacagttttggatagtactcaacctatg |
249 |
Q |
| |
|
|||||| |||||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
2451350 |
aaaacaacaatcatatcacaattttgtatagtactcaacctatg |
2451307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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