View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13706_low_36 (Length: 251)
Name: NF13706_low_36
Description: NF13706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13706_low_36 |
 | |
|
| [»] scaffold0649 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 6113352 - 6113561
Alignment:
| Q |
20 |
aaggagtatattgaaagtttggtttcgacttgttgatagtaagttcttctttcattaactcatgtacaatgtaatatgcatgttcttctttctgaaggta |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
6113352 |
aaggagtatattgaaagtttggtttcgacttgttgatagtaagttcttctttcattaa-----------tgtaatatgtatgttcttctttctgaaggta |
6113440 |
T |
|
| Q |
120 |
gaatgaaattattacataatctaatttctaataatacaacccttttgttacctatagtgcaaatttgtattcttgacatcatgcatagattgaattaagt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
|
|
| T |
6113441 |
gaatgaaattattacataatctaatttctaataatacaacccttgtgttacctatagtgcaaacttgtattcttgacatcatgcatagattgaattaatt |
6113540 |
T |
|
| Q |
220 |
gtccacatagttcttgttctt |
240 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
6113541 |
gtccacatagttcttgttctt |
6113561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 5689 - 5740
Alignment:
| Q |
20 |
aaggagtatattgaaagtttggtttcgacttgttgatagtaagttcttcttt |
71 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
5689 |
aaggattatattgaaagtttggtttctgcttgttgaaagtaagttcttcttt |
5740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 20057876 - 20057819
Alignment:
| Q |
20 |
aaggagtatattgaaagtttggtttcgacttgttgatagtaagttcttctttcattaa |
77 |
Q |
| |
|
||||| ||| ||||||| |||| ||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
20057876 |
aaggattatgttgaaagcttggcttcaacttgttgatagtaagttcttcttttattaa |
20057819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 19645499 - 19645455
Alignment:
| Q |
20 |
aaggagtatattgaaagtttggtttcgacttgttgatagtaagtt |
64 |
Q |
| |
|
||||| ||| |||||||||||||||| ||||||||| |||||||| |
|
|
| T |
19645499 |
aaggattatgttgaaagtttggtttcaacttgttgaaagtaagtt |
19645455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 20967934 - 20967982
Alignment:
| Q |
18 |
caaaggagtatattgaaagtttggtttcgacttgttgatagtaagttct |
66 |
Q |
| |
|
||||||| ||||| |||||||||||||| ||||||||| |||||||||| |
|
|
| T |
20967934 |
caaaggattatatcgaaagtttggtttcaacttgttgaaagtaagttct |
20967982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 21021081 - 21021044
Alignment:
| Q |
30 |
ttgaaagtttggtttcgacttgttgatagtaagttctt |
67 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
21021081 |
ttgaaagtttggtttcaacttgttgaaagtaagttctt |
21021044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University