View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13706_low_41 (Length: 229)

Name: NF13706_low_41
Description: NF13706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13706_low_41
NF13706_low_41
[»] chr1 (7 HSPs)
chr1 (152-229)||(14479559-14479636)
chr1 (152-229)||(51445585-51445662)
chr1 (157-229)||(14478266-14478338)
chr1 (157-229)||(28050321-28050393)
chr1 (157-229)||(28051651-28051723)
chr1 (157-221)||(51446895-51446959)
chr1 (171-221)||(40533656-40533706)
[»] chr7 (7 HSPs)
chr7 (157-229)||(41328219-41328291)
chr7 (157-229)||(39981317-39981389)
chr7 (157-229)||(41329514-41329586)
chr7 (11-104)||(20295611-20295704)
chr7 (157-229)||(32653463-32653535)
chr7 (87-153)||(20286012-20286079)
chr7 (157-209)||(32653731-32653783)
[»] chr2 (7 HSPs)
chr2 (157-229)||(28610022-28610094)
chr2 (157-229)||(4921102-4921174)
chr2 (157-225)||(28611300-28611368)
chr2 (157-229)||(4919827-4919899)
chr2 (158-221)||(8321295-8321358)
chr2 (180-229)||(45699523-45699572)
chr2 (154-221)||(19398852-19398919)
[»] chr4 (11 HSPs)
chr4 (154-229)||(36243516-36243591)
chr4 (157-229)||(8363433-8363505)
chr4 (157-229)||(36244811-36244883)
chr4 (157-229)||(56156935-56157007)
chr4 (157-229)||(26496353-26496425)
chr4 (151-221)||(20625556-20625626)
chr4 (157-229)||(26495122-26495194)
chr4 (157-221)||(52137426-52137490)
chr4 (157-229)||(56157540-56157612)
chr4 (157-227)||(20620139-20620209)
chr4 (157-219)||(52138848-52138910)
[»] scaffold0114 (1 HSPs)
scaffold0114 (157-229)||(38540-38612)
[»] chr8 (1 HSPs)
chr8 (157-229)||(9854923-9854995)
[»] chr6 (1 HSPs)
chr6 (157-229)||(11722786-11722858)
[»] chr5 (4 HSPs)
chr5 (157-221)||(11796569-11796633)
chr5 (157-227)||(23325912-23325982)
chr5 (157-221)||(23334019-23334083)
chr5 (157-203)||(11797603-11797649)
[»] chr3 (4 HSPs)
chr3 (157-229)||(13622002-13622074)
chr3 (157-229)||(49379701-49379773)
chr3 (157-229)||(13620920-13620992)
chr3 (157-221)||(49381006-49381070)
[»] scaffold0219 (1 HSPs)
scaffold0219 (157-221)||(6895-6959)


Alignment Details
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 14479636 - 14479559
Alignment:
Q  152 aaagacttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacatt 229  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||| |||||||    
T  14479636 aaaggcttaattggacatttggtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcacatt 14479559  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 51445585 - 51445662
Alignment:
Q  152 aaagacttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacatt 229  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||    
T  51445585 aaaggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacatt 51445662  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 14478266 - 14478338
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacatt 229  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||| |||||||    
T  14478266 cttaattggacatttggtcctctaaataattatgtgtttacattttgatcccataaattgtaaaactcacatt 14478338  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 28050321 - 28050393
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacatt 229  Q
    ||||||| ||||||||||||| |||||||||||| |||||||||||| ||||| |||||||||||| ||||||    
T  28050321 cttaattagacatttggtcccttaaataattatgtgtttacattttggtcccataaattgtaaaatccacatt 28050393  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 28051723 - 28051651
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacatt 229  Q
    |||||||||| ||||| | ||||||||||||||| |||||||||||| ||||| ||||||||||| |||||||    
T  28051723 cttaattggatatttgattccctaaataattatgagtttacattttggtcccataaattgtaaaactcacatt 28051651  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 51446959 - 51446895
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaa 221  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||| || || |||||||||||    
T  51446959 cttaattggacatttggtcctctaaataattatgcatttacattttggtcacataaattgtaaaa 51446895  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 40533706 - 40533656
Alignment:
Q  171 tggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaa 221  Q
    |||||||||||||||||||  |||||||||||| | ||| |||||||||||    
T  40533706 tggtcccctaaataattatcagtttacattttggttccataaattgtaaaa 40533656  T

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Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 41328219 - 41328291
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacatt 229  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||    
T  41328219 cttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacatt 41328291  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 39981317 - 39981389
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacatt 229  Q
    |||||||||||||||| ||| |||||||||| ||||||||||||||| ||||| |||||||||||||||||||    
T  39981317 cttaattggacatttgatcctctaaataattgtgcgtttacattttggtcccataaattgtaaaattcacatt 39981389  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 41329586 - 41329514
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacatt 229  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||| | ||||||||||| |||||||    
T  41329586 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacatt 41329514  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 20295611 - 20295704
Alignment:
Q  11 aaaacaatttaattgaatattaattagtctggattcttttcaacataaaatattagaaattcattgttcatagtgttattaggtagattcgaaa 104  Q
    ||||||||  ||||||||||||||||||||||||| |||| |||| ||| |||||| ||||||||||| ||  ||| ||| |||||||||||||    
T  20295611 aaaacaatgaaattgaatattaattagtctggattgttttgaacaaaaagtattagtaattcattgttgatgatgtaattcggtagattcgaaa 20295704  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 32653463 - 32653535
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacatt 229  Q
    |||||||||| |||| ||||| ||||||||||||||||||||||||| || || ||||||||||| |||||||    
T  32653463 cttaattggatatttagtcccttaaataattatgcgtttacattttggtctcataaattgtaaaactcacatt 32653535  T

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Target: chr7; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 20286012 - 20286079
Alignment:
Q  87 tattaggtagattcgaaaccacattatgttatcttttcaacct-tatgttcctcatttaatagataaa 153  Q
    ||||||||||||||||||||||||||| |||||| |||||||| ||| |||||| |||||||||||||    
T  20286012 tattaggtagattcgaaaccacattattttatctcttcaacctctatattcctcctttaatagataaa 20286079  T

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Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 32653783 - 32653731
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttgatccca 209  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||| |||||    
T  32653783 cttaattggacatttggtcccctaaataattatgtatttacattttggtccca 32653731  T

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Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 28610022 - 28610094
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacatt 229  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||| ||||| |||||||||||||||||||    
T  28610022 cttaattggacatttggtcacctaaataattatgagtttacattttggtcccataaattgtaaaattcacatt 28610094  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 4921174 - 4921102
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacatt 229  Q
    |||||||||||||||||||| |||||||||||||||||||||||||  ||||| ||||||||||| |||||||    
T  4921174 cttaattggacatttggtcctctaaataattatgcgtttacattttagtcccataaattgtaaaactcacatt 4921102  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 28611368 - 28611300
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattca 225  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||    
T  28611368 cttaattggatatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaattca 28611300  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 4919827 - 4919899
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacatt 229  Q
    |||||||||||||||||||| |||||||||||||| |||||| |||| ||||| ||||| |||||| ||||||    
T  4919827 cttaattggacatttggtcctctaaataattatgcatttacaatttggtcccataaattataaaatccacatt 4919899  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 8321358 - 8321295
Alignment:
Q  158 ttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaa 221  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||| ||||| ||||| |||||    
T  8321358 ttaattggacatttgatcctctaaataattatgcgtttacattttggtcccataaattttaaaa 8321295  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 45699523 - 45699572
Alignment:
Q  180 aaataattatgcgtttacattttgatcccacaaattgtaaaattcacatt 229  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||||||||    
T  45699523 aaataattatgtgtttacattttggtcccataaattgtaaaattcacatt 45699572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 19398919 - 19398852
Alignment:
Q  154 agacttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaa 221  Q
    |||||||||||| | |||||| |||||||||||||   |||||||||||| ||||| |||||||||||    
T  19398919 agacttaattggtcttttggttccctaaataattaccggtttacattttggtcccataaattgtaaaa 19398852  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 154 - 229
Target Start/End: Original strand, 36243516 - 36243591
Alignment:
Q  154 agacttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacatt 229  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||| | ||||||||||| |||||||    
T  36243516 agacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacatt 36243591  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 8363505 - 8363433
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacatt 229  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||| | ||||||||||| |||||||    
T  8363505 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacatt 8363433  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 36244883 - 36244811
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacatt 229  Q
    |||||||||| ||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| |||||||    
T  36244883 cttaattggatatttggtccccaaaataattatgagtttacattttgatcccataaattgtaaaactcacatt 36244811  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 56156935 - 56157007
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacatt 229  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||| ||||| ||||||||||| |||||||    
T  56156935 cttaattggatatttggtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcacatt 56157007  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 26496425 - 26496353
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacatt 229  Q
    |||||||||||||||||||| |||| |||||||| |||||||||||| ||||| ||||||||||| |||||||    
T  26496425 cttaattggacatttggtcctctaactaattatgtgtttacattttggtcccataaattgtaaaactcacatt 26496353  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 20625626 - 20625556
Alignment:
Q  151 aaaagacttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaa 221  Q
    ||||| |||||||||||||||||||| ||||||||||||| |||||||||||| ||||| || ||||||||    
T  20625626 aaaaggcttaattggacatttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaa 20625556  T

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Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 26495122 - 26495194
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacatt 229  Q
    |||||||| | ||||||||||||||||||||||| |||||||||||| ||| | ||||||||||| |||||||    
T  26495122 cttaattgaatatttggtcccctaaataattatgagtttacattttgctcctataaattgtaaaactcacatt 26495194  T

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Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 52137426 - 52137490
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaa 221  Q
    |||||||||| ||||||||| ||||||||||||| |||||||||||| ||||| |||||||||||    
T  52137426 cttaattggatatttggtcctctaaataattatgtgtttacattttggtcccataaattgtaaaa 52137490  T

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Target: chr4; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 56157612 - 56157540
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacatt 229  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |  || ||||||||||| |||||||    
T  56157612 cttaattggatatttggtcctctaaataattatgcgtttacattttggtttcataaattgtaaaactcacatt 56157540  T

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Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 20620139 - 20620209
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcaca 227  Q
    ||||||||||| |||||||| ||||||||||||| |||||||||||| ||||| || |||||||| |||||    
T  20620139 cttaattggacctttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaactcaca 20620209  T

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Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 219
Target Start/End: Complemental strand, 52138910 - 52138848
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaa 219  Q
    ||||||| |||||||| ||| ||||||||||||||||||| ||||||||| || |||||||||    
T  52138910 cttaattcgacatttgatcctctaaataattatgcgtttatattttgatcacataaattgtaa 52138848  T

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Target: scaffold0114 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 38540 - 38612
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacatt 229  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||| ||||| ||||||||||| |||||||    
T  38540 cttaattggacatttggtcccctaaataattatgagtttccattttggtcccataaattgtaaaactcacatt 38612  T

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Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 9854995 - 9854923
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacatt 229  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| ||||| |||||||||||| ||||||    
T  9854995 cttaattggacatttggtcctctaaataattatgtgtttacattttggtcccataaattgtaaaatccacatt 9854923  T

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Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 11722786 - 11722858
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacatt 229  Q
    |||||||||||||||| ||| ||||||||||||| |||||||||||||||||| ||||||||||| |||||||    
T  11722786 cttaattggacatttgatcctctaaataattatgtgtttacattttgatcccataaattgtaaaactcacatt 11722858  T

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Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 11796569 - 11796633
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaa 221  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||    
T  11796569 cttaattggacatttggtcccctaaataattatgagtttacattttggtcccataaattgtaaaa 11796633  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 23325912 - 23325982
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcaca 227  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| ||||| || |||||||| |||||    
T  23325912 cttaattggacatttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaactcaca 23325982  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 23334083 - 23334019
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaa 221  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| ||||| || ||||||||    
T  23334083 cttaattggacatttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaa 23334019  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 11797649 - 11797603
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttg 203  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  11797649 cttaattggacatttggtcccctaaataattatgagtttacattttg 11797603  T

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Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 13622074 - 13622002
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacatt 229  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||| | ||||||||||| |||||||    
T  13622074 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacatt 13622002  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 49379701 - 49379773
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacatt 229  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||| ||||| ||||||||||| |||||||    
T  49379701 cttaattggacatttggtcctctaaataattatgcgtttatattttggtcccataaattgtaaaactcacatt 49379773  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 13620920 - 13620992
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacatt 229  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||| || || ||||||||||| |||||||    
T  13620920 cttaatttgacatttggtcctctaaataattatgcgtttacattttggtctcataaattgtaaaactcacatt 13620992  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 49381070 - 49381006
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaa 221  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||| ||| | |||||||||||    
T  49381070 cttaattggatatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaa 49381006  T

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Target: scaffold0219 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 6895 - 6959
Alignment:
Q  157 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaa 221  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| ||||| |||||||||||    
T  6895 cttaattggacatttggtcctctaaataattatgtgtttacattttggtcccataaattgtaaaa 6959  T

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