View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13706_low_43 (Length: 212)
Name: NF13706_low_43
Description: NF13706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13706_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 3e-96; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 3913850 - 3913673
Alignment:
| Q |
17 |
cataggagtgatatctattgttggtatgggagggattggaaaaacaacactagctaaactactttacaatgatcttgaggtaggagagaattttgaccta |
116 |
Q |
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| T |
3913850 |
cataggagtgatatctattgttggtatgggagggattggaaaaacaacactagctaaactactttacaatgatcttgaggtaggagagaattttgaccta |
3913751 |
T |
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| Q |
117 |
aaagcttgggcatatatatcaaaggattttgatgtttgtagggtgacaaaaattcttcttgaatgtgtcagttcaaag |
194 |
Q |
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| T |
3913750 |
aaagcttgggcatatatatcaaaggattttgatgtttgtagggtgacaaaaattcttcttgaatgtgtcagttcaaag |
3913673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 3885137 - 3885279
Alignment:
| Q |
18 |
ataggagtgatatctattgttggtatgggagggattggaaaaacaacactagctaaactactttacaatgatcttgaggtaggagagaattttgacctaa |
117 |
Q |
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| T |
3885137 |
ataggagtgatttccattgtaggcatgggagggcttggaaaaacaacactagctaaactccttttcaatgatcatgaagtagaagacaattttgatctta |
3885236 |
T |
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| Q |
118 |
aagcttgggcatatatatcaaaggattttgatgtttgtagggt |
160 |
Q |
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| T |
3885237 |
aagcttgggcatatatttcaaaggattttgatgtttgtagggt |
3885279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 4115408 - 4115274
Alignment:
| Q |
18 |
ataggagtgatatctattgttggtatgggagggattggaaaaacaacactagctaaactactttacaatgatcttgaggtaggag-agaattttgaccta |
116 |
Q |
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| T |
4115408 |
ataggagtgatttccattgtggggatgggagggctaggaaaaacaacactagctaaaatcctttacaatgaccatgatgt-gaagcagaaatttgaggta |
4115310 |
T |
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| Q |
117 |
aaagcttgggcatatatatcaaaggattttgatgtt |
152 |
Q |
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| T |
4115309 |
agagggtgggcacatatctcaaaggattttgatgtt |
4115274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 4060930 - 4060860
Alignment:
| Q |
18 |
ataggagtgatatctattgttggtatgggagggattggaaaaacaacactagctaaactactttacaatga |
88 |
Q |
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| T |
4060930 |
ataggagtgatttccattgtggggatgggagggctaggaaaaacaacacttgctaaactcctttacaatga |
4060860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 4092664 - 4092594
Alignment:
| Q |
18 |
ataggagtgatatctattgttggtatgggagggattggaaaaacaacactagctaaactactttacaatga |
88 |
Q |
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| T |
4092664 |
ataggagtgatttccattgtggggatgggagggctaggaaaaacaacgctagctaaactcctttacaatga |
4092594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 4080538 - 4080471
Alignment:
| Q |
18 |
ataggagtgatatctattgttggtatgggagggattggaaaaacaacactagctaaactactttacaa |
85 |
Q |
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||||||||||| || ||||| || ||||||||| | ||||||||||||||||||||||| || ||||| |
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| T |
4080538 |
ataggagtgatttccattgtggggatgggagggctaggaaaaacaacactagctaaactcctctacaa |
4080471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 4129672 - 4129743
Alignment:
| Q |
18 |
ataggagtgatatctattgttggtatgggagggattggaaaaacaacactagctaaactactttacaatgat |
89 |
Q |
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| T |
4129672 |
ataggagtgatttccattgtaggtatgggagggctagggaaaacaacattagctaaaatcctttacaatgat |
4129743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 7e-42; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 14005559 - 14005417
Alignment:
| Q |
18 |
ataggagtgatatctattgttggtatgggagggattggaaaaacaacactagctaaactactttacaatgatcttgaggtaggagagaattttgacctaa |
117 |
Q |
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||||||||||| || ||||| || ||||||||| ||||||||||||||||||||||||| |||| |||||||| ||| |||| ||| |||||||| || | |
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| T |
14005559 |
ataggagtgatttccattgtaggcatgggagggcttggaaaaacaacactagctaaactccttttcaatgatcatgaagtagaagacaattttgatctta |
14005460 |
T |
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| Q |
118 |
aagcttgggcatatatatcaaaggattttgatgtttgtagggt |
160 |
Q |
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| T |
14005459 |
aagcttgggcatatatttcaaaggattttgatgtttgtagggt |
14005417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 13933096 - 13933163
Alignment:
| Q |
18 |
ataggagtgatatctattgttggtatgggagggattggaaaaacaacactagctaaactactttacaa |
85 |
Q |
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|
||||||||||| || ||||| || ||||||||| | ||||||||||||||||||||||| || ||||| |
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| T |
13933096 |
ataggagtgatttccattgtggggatgggagggctaggaaaaacaacactagctaaactcctctacaa |
13933163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 17311492 - 17311549
Alignment:
| Q |
33 |
attgttggtatgggagggattggaaaaacaacactagctaaactactttacaatgatc |
90 |
Q |
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||||| ||||||||||||||||| |||||| | || || ||||||||||||||||||| |
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| T |
17311492 |
attgtgggtatgggagggattggtaaaacagcccttgccaaactactttacaatgatc |
17311549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 16446538 - 16446595
Alignment:
| Q |
33 |
attgttggtatgggagggattggaaaaacaacactagctaaactactttacaatgatc |
90 |
Q |
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||||| ||||||||||||||||| |||||| | || |||||||| |||||| |||||| |
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| T |
16446538 |
attgtgggtatgggagggattggtaaaacatcccttgctaaactgctttactatgatc |
16446595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 5988204 - 5988256
Alignment:
| Q |
33 |
attgttggtatgggagggattggaaaaacaacactagctaaactactttacaa |
85 |
Q |
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||||| |||||||||||| |||| |||||||| ||||| ||||| |||||||| |
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| T |
5988204 |
attgtgggtatgggaggggttggtaaaacaaccctagccaaactcctttacaa |
5988256 |
T |
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