View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13706_low_44 (Length: 207)

Name: NF13706_low_44
Description: NF13706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13706_low_44
NF13706_low_44
[»] chr2 (24 HSPs)
chr2 (1-207)||(41843287-41843499)
chr2 (2-74)||(20242729-20242801)
chr2 (2-78)||(34784984-34785060)
chr2 (2-97)||(37558939-37559034)
chr2 (2-39)||(5367212-5367249)
chr2 (2-78)||(36756346-36756422)
chr2 (2-73)||(36096377-36096448)
chr2 (4-38)||(30471059-30471093)
chr2 (2-79)||(12668425-12668502)
chr2 (2-78)||(19536399-19536476)
chr2 (1-38)||(28524447-28524484)
chr2 (1-38)||(31808098-31808135)
chr2 (1-38)||(39279696-39279733)
chr2 (2-38)||(5473349-5473385)
chr2 (2-74)||(11223865-11223937)
chr2 (2-78)||(18421944-18422020)
chr2 (2-74)||(18841015-18841087)
chr2 (2-38)||(18889593-18889629)
chr2 (3-35)||(23718050-23718082)
chr2 (3-35)||(24105722-24105754)
chr2 (2-38)||(34691807-34691843)
chr2 (2-38)||(34714219-34714255)
chr2 (2-38)||(38355889-38355925)
chr2 (2-38)||(44860341-44860377)
[»] chr6 (25 HSPs)
chr6 (2-96)||(28152062-28152155)
chr6 (2-78)||(8365521-8365597)
chr6 (2-73)||(5626698-5626769)
chr6 (2-38)||(7027263-7027299)
chr6 (2-38)||(7265595-7265631)
chr6 (2-38)||(9025496-9025532)
chr6 (2-78)||(34595115-34595191)
chr6 (2-37)||(9027200-9027235)
chr6 (2-97)||(17841591-17841686)
chr6 (1-78)||(9658860-9658937)
chr6 (15-100)||(17302515-17302601)
chr6 (2-67)||(16488592-16488657)
chr6 (1-78)||(16833289-16833366)
chr6 (2-67)||(18367828-18367893)
chr6 (2-38)||(7086816-7086852)
chr6 (2-38)||(7378000-7378036)
chr6 (2-78)||(8776975-8777051)
chr6 (2-38)||(9617455-9617491)
chr6 (2-38)||(9629404-9629440)
chr6 (2-97)||(10770676-10770776)
chr6 (6-38)||(11591876-11591908)
chr6 (2-38)||(13360374-13360410)
chr6 (2-74)||(16766682-16766754)
chr6 (2-38)||(19040373-19040409)
chr6 (6-38)||(26562710-26562742)
[»] chr5 (17 HSPs)
chr5 (2-78)||(6401479-6401555)
chr5 (2-67)||(30099040-30099105)
chr5 (4-52)||(39758279-39758327)
chr5 (5-97)||(14674231-14674323)
chr5 (2-52)||(32426871-32426921)
chr5 (2-76)||(39698524-39698598)
chr5 (2-67)||(21814253-21814318)
chr5 (2-38)||(2436943-2436979)
chr5 (2-38)||(3966524-3966560)
chr5 (2-38)||(6471891-6471927)
chr5 (2-78)||(21191058-21191134)
chr5 (2-78)||(21522731-21522807)
chr5 (2-78)||(21533297-21533373)
chr5 (2-38)||(28588676-28588712)
chr5 (2-38)||(30502390-30502426)
chr5 (2-38)||(30542733-30542769)
chr5 (6-38)||(41091263-41091295)
[»] chr1 (32 HSPs)
chr1 (4-78)||(34315693-34315767)
chr1 (2-76)||(1815240-1815314)
chr1 (2-78)||(1486711-1486787)
chr1 (2-96)||(46348385-46348479)
chr1 (1-38)||(1864881-1864918)
chr1 (1-38)||(10572590-10572627)
chr1 (5-78)||(10577740-10577813)
chr1 (1-38)||(13997904-13997941)
chr1 (2-47)||(30749852-30749897)
chr1 (2-47)||(30771303-30771348)
chr1 (2-79)||(42359451-42359528)
chr1 (2-38)||(9709841-9709877)
chr1 (4-97)||(25934572-25934671)
chr1 (2-38)||(34371734-34371770)
chr1 (2-38)||(44482251-44482287)
chr1 (2-73)||(24577188-24577259)
chr1 (1-38)||(10233274-10233311)
chr1 (2-39)||(13436478-13436515)
chr1 (2-75)||(37598816-37598888)
chr1 (2-38)||(5898268-5898304)
chr1 (2-38)||(5944304-5944340)
chr1 (2-38)||(7918213-7918249)
chr1 (2-38)||(9828065-9828101)
chr1 (69-97)||(10475058-10475086)
chr1 (6-38)||(17705592-17705624)
chr1 (2-38)||(20157352-20157388)
chr1 (2-38)||(25361907-25361943)
chr1 (2-74)||(28273090-28273162)
chr1 (2-38)||(36878482-36878518)
chr1 (2-38)||(40181892-40181928)
chr1 (2-38)||(43492496-43492532)
chr1 (2-38)||(52903270-52903306)
[»] chr7 (13 HSPs)
chr7 (2-78)||(18213035-18213112)
chr7 (2-46)||(640126-640170)
chr7 (2-97)||(15680771-15680866)
chr7 (2-52)||(39138451-39138501)
chr7 (14-59)||(1656676-1656721)
chr7 (2-38)||(22602712-22602748)
chr7 (1-38)||(15902843-15902880)
chr7 (1-38)||(17851452-17851489)
chr7 (2-38)||(1433475-1433511)
chr7 (2-38)||(5835268-5835304)
chr7 (2-38)||(9482955-9482991)
chr7 (2-78)||(18013076-18013152)
chr7 (2-38)||(20549812-20549848)
[»] chr8 (17 HSPs)
chr8 (2-97)||(36450756-36450851)
chr8 (2-97)||(14134661-14134756)
chr8 (2-76)||(15816131-15816205)
chr8 (2-38)||(4786340-4786376)
chr8 (2-38)||(8847277-8847313)
chr8 (2-38)||(11927088-11927124)
chr8 (2-54)||(18964182-18964234)
chr8 (2-38)||(26902177-26902213)
chr8 (56-98)||(31109574-31109616)
chr8 (1-38)||(11803280-11803317)
chr8 (1-45)||(3677800-3677844)
chr8 (2-38)||(11944686-11944722)
chr8 (2-38)||(13844598-13844634)
chr8 (1-45)||(22493508-22493552)
chr8 (2-38)||(28384996-28385032)
chr8 (2-78)||(34451039-34451115)
chr8 (6-38)||(34897106-34897138)
[»] chr3 (16 HSPs)
chr3 (2-73)||(35222924-35222995)
chr3 (2-76)||(18426932-18427006)
chr3 (2-38)||(7928471-7928507)
chr3 (2-38)||(8789552-8789588)
chr3 (2-38)||(40993337-40993373)
chr3 (6-45)||(8930836-8930875)
chr3 (1-96)||(20503429-20503523)
chr3 (2-45)||(38731232-38731275)
chr3 (2-51)||(13845527-13845576)
chr3 (2-38)||(8842350-8842386)
chr3 (2-78)||(10954933-10955009)
chr3 (2-94)||(14209079-14209170)
chr3 (2-38)||(25093523-25093559)
chr3 (2-97)||(28812477-28812572)
chr3 (2-78)||(28917982-28918058)
chr3 (2-78)||(55401056-55401132)
[»] scaffold0020 (1 HSPs)
scaffold0020 (2-38)||(135314-135350)
[»] chr4 (13 HSPs)
chr4 (2-78)||(5414174-5414250)
chr4 (2-78)||(12797340-12797415)
chr4 (2-38)||(18576039-18576075)
chr4 (2-78)||(40179638-40179714)
chr4 (2-95)||(30298910-30299004)
chr4 (2-95)||(30327778-30327872)
chr4 (2-64)||(54580025-54580087)
chr4 (2-79)||(35157987-35158064)
chr4 (5-38)||(40613471-40613504)
chr4 (2-38)||(5775360-5775396)
chr4 (2-38)||(15659762-15659798)
chr4 (2-78)||(19482649-19482725)
chr4 (2-38)||(22234892-22234928)
[»] scaffold0123 (1 HSPs)
scaffold0123 (4-38)||(44529-44563)
[»] scaffold0623 (1 HSPs)
scaffold0623 (2-74)||(5998-6070)
[»] scaffold0171 (1 HSPs)
scaffold0171 (2-38)||(23441-23477)
[»] scaffold0116 (1 HSPs)
scaffold0116 (2-74)||(9883-9955)
[»] scaffold0036 (1 HSPs)
scaffold0036 (2-38)||(9749-9785)


Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 41843499 - 41843287
Alignment:
Q  1 aacaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgttcatatccgtgcttcatagaat 100  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41843499 aacaccgacacatataattataccgaattatgtgatttcctaaaaaatttagttttgtcggcgtgtcagtgtccgtgttcatatccgtgcttcatagaat 41843400  T
Q  101 gaaaagcaatataattaatatttatgatgatgatgatga------gaaggtaaaagaaatagtaaggttgaccagtgnnnnnnntcttgtcccatttttt 194  Q
    |||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  41843399 gaaaagcaatataattaatatttatgatgatgatgatgatagtgagaaggtaaaagaaatagtaaggttgaccagtgaaaaaaatcttgtcccatttttt 41843300  T
Q  195 atgtaggaggtgc 207  Q
    |||||||||||||    
T  41843299 atgtaggaggtgc 41843287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 20242729 - 20242801
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtcc 74  Q
    |||||||||||||||||||||| ||||||||||||||  ||||||| |||||| |||| ||||||||||||||    
T  20242729 acaccgacacatataattacactgaattatgtgattttctaaaaaaattagttgtgtcggcgtgtcagtgtcc 20242801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 34784984 - 34785060
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 78  Q
    ||||||||||||||||||||||  |||||||||||||  ||||||| |||||| |||| | ||||||||||||||||    
T  34784984 acaccgacacatataattacactaaattatgtgattttctaaaaaaattagttgtgtcggtgtgtcagtgtccgtgt 34785060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 97
Target Start/End: Complemental strand, 37559034 - 37558939
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaat-ttagttttgtcagcgtgtcagtgtccgtgttcatatccgtgcttcatag 97  Q
    |||||||||| | ||||||||  |||||||||||||| ||| ||| | |||| | |||| |||||||||||||||||| | ||||||||||||||||    
T  37559034 acaccgacacttgtaattacattgaattatgtgattt-ttacaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatccgtgcttcatag 37558939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 5367249 - 5367212
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttc 39  Q
    |||||||||||||||||||||| |||||||||||||||    
T  5367249 acaccgacacatataattacactgaattatgtgatttc 5367212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 36756346 - 36756422
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 78  Q
    |||||||||| ||||||||||| ||||||||| ||||||| |||   |||||| ||||  |||||||||||| ||||    
T  36756346 acaccgacacttataattacactgaattatgttatttcttcaaattattagttgtgtcgacgtgtcagtgtctgtgt 36756422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 36096377 - 36096448
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtc 73  Q
    ||||||||| |||||||||||| | ||| ||||||||  |||||||||||| | |||| ||||||| |||||    
T  36096377 acaccgacaaatataattacactgcattttgtgattttctaaaaaatttagctgtgtcggcgtgtccgtgtc 36096448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 30471093 - 30471059
Alignment:
Q  4 accgacacatataattacaccgaattatgtgattt 38  Q
    ||||||||||||||||||| |||||||||||||||    
T  30471093 accgacacatataattacatcgaattatgtgattt 30471059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 12668425 - 12668502
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgtt 79  Q
    |||||||||| ||||||||||| ||||||||| |||| || |||   |||||| |||| |||||||||| || |||||    
T  12668425 acaccgacacttataattacactgaattatgtcattttttcaaattattagttatgtcggcgtgtcagtatctgtgtt 12668502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 19536399 - 19536476
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaat-ttagttttgtcagcgtgtcagtgtccgtgt 78  Q
    |||||||||| | ||||||||| |||||||||||||| ||  ||| | |||||| |||| |||||||| |||||||||    
T  19536399 acaccgacacttgtaattacactgaattatgtgatttttttcaaattattagttgtgtcggcgtgtcattgtccgtgt 19536476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 28524484 - 28524447
Alignment:
Q  1 aacaccgacacatataattacaccgaattatgtgattt 38  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  28524484 aacaacgacacatataattacactgaattatgtgattt 28524447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 31808135 - 31808098
Alignment:
Q  1 aacaccgacacatataattacaccgaattatgtgattt 38  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  31808135 aacactgacacatataattacactgaattatgtgattt 31808098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 39279733 - 39279696
Alignment:
Q  1 aacaccgacacatataattacaccgaattatgtgattt 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  39279733 aacaccgacacatataattacactgaattatttgattt 39279696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 5473385 - 5473349
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||  ||||||||||||||||||||||    
T  5473385 acaccgacacataatattacaccgaattatgtgattt 5473349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 11223865 - 11223937
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtcc 74  Q
    |||||||||| | ||||||||| ||||||||| |||| || ||||  |||| | |||||||||||| ||||||    
T  11223865 acaccgacacttgtaattacactgaattatgttattttttcaaaatattagctgtgtcagcgtgtctgtgtcc 11223937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 18422020 - 18421944
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 78  Q
    |||||||||| | ||||||||| |||||||||||| | || |||   ||| || |||| ||||||||||||||||||    
T  18422020 acaccgacacttgtaattacactgaattatgtgatatttttaaattattaattgtgtcggcgtgtcagtgtccgtgt 18421944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 18841015 - 18841087
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtcc 74  Q
    |||||||||| | |||||||||  |||||||| |||| || |||   |||||| |||||||||||||||||||    
T  18841015 acaccgacacttgtaattacacttaattatgtaattttttcaaattattagttgtgtcagcgtgtcagtgtcc 18841087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 18889593 - 18889629
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  18889593 acaccgacacatatgattacactgaattatgtgattt 18889629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 23718082 - 23718050
Alignment:
Q  3 caccgacacatataattacaccgaattatgtga 35  Q
    ||||||||||||||||||||| |||||||||||    
T  23718082 caccgacacatataattacactgaattatgtga 23718050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 24105754 - 24105722
Alignment:
Q  3 caccgacacatataattacaccgaattatgtga 35  Q
    ||||||||||||||||||||| |||||||||||    
T  24105754 caccgacacatataattacactgaattatgtga 24105722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 34691807 - 34691843
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  34691807 acaccgacacatataattacactgaattatatgattt 34691843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 34714219 - 34714255
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  34714219 acaccgacacatataattacactgaattatatgattt 34714255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 38355889 - 38355925
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  38355889 acaccgacacatataatcacactgaattatgtgattt 38355925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 44860377 - 44860341
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||||||| |||||||| |||||    
T  44860377 acaccgacacatataattacactgaattatgcgattt 44860341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 28152155 - 28152062
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgttcatatccgtgcttcata 96  Q
    |||||||||| | ||||||||| |||||||||||||| | |||  ||| || |||||| |||||||||||||||||| |||||||||||||||||    
T  28152155 acaccgacacttgtaattacactgaattatgtgatttttcaaattatt-agctttgtcggcgtgtcagtgtccgtgtccatatccgtgcttcata 28152062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 8365521 - 8365597
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 78  Q
    |||||||||| | |||||||||||||||||||||| | || |||   |||||| |||| ||||||||||||||||||    
T  8365521 acaccgacacttgtaattacaccgaattatgtgatattttcaaattattagttgtgtcggcgtgtcagtgtccgtgt 8365597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 5626698 - 5626769
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtc 73  Q
    ||||||||||||||| |||||| ||| || |||||||  ||||||| |||||| |||| |||||||||||||    
T  5626698 acaccgacacatatatttacactgaactaagtgattttctaaaaaaattagttgtgtcggcgtgtcagtgtc 5626769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 7027299 - 7027263
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||||||| ||||||||||||||    
T  7027299 acaccgacacatataattacactgaattatgtgattt 7027263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 7265595 - 7265631
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||||||| ||||||||||||||    
T  7265595 acaccgacacatataattacactgaattatgtgattt 7265631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 9025496 - 9025532
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||||||| ||||||||||||||    
T  9025496 acaccgacacatataattacactgaattatgtgattt 9025532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 34595191 - 34595115
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 78  Q
    |||||||||| | ||||||||| |||||||||||||| || |||   |||||| |||| |||||||| |||||||||    
T  34595191 acaccgacacttgtaattacactgaattatgtgattttttcaaattattagttgtgtcggcgtgtcattgtccgtgt 34595115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 9027235 - 9027200
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatt 37  Q
    |||||||||||||||||||||| |||||||||||||    
T  9027235 acaccgacacatataattacacggaattatgtgatt 9027200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 97
Target Start/End: Original strand, 17841591 - 17841686
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgttcatatccgtgcttcatag 97  Q
    |||||| ||| | |||||||||  ||||||||||||| || |||   |||| | |||| |||||||||||||||||| | |||| |||||||||||    
T  17841591 acaccgtcacttgtaattacactaaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatcagtgcttcatag 17841686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 9658937 - 9658860
Alignment:
Q  1 aacaccgacacatataattacaccgaattatgtga-tttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 78  Q
    |||||||||| |||||||||||| ||||||||||| |||||||||  | ||||   |||| ||||||||||||||||||    
T  9658937 aacaccgacaaatataattacactgaattatgtgattttcttaaatta-ttagcggtgtcggcgtgtcagtgtccgtgt 9658860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 17302601 - 17302515
Alignment:
Q  15 taattacaccgaattatgtgatttcttaaaaaat-ttagttttgtcagcgtgtcagtgtccgtgttcatatccgtgcttcatagaat 100  Q
    ||||||||  |||||||||||||| ||  ||| | |||||| ||||||||||||||||| ||||| | |||| | ||||||||||||    
T  17302601 taattacattgaattatgtgatttttttcaaattattagttgtgtcagcgtgtcagtgttcgtgtccgtatctgcgcttcatagaat 17302515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 16488592 - 16488657
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtc 67  Q
    |||||||||||||||||||||| | ||| ||||||||  ||||||| |||| | |||| |||||||    
T  16488592 acaccgacacatataattacactgcattttgtgattttctaaaaaaattagctgtgtcggcgtgtc 16488657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 16833366 - 16833289
Alignment:
Q  1 aacaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 78  Q
    ||||||||||| | ||||||||| ||| |||||||||| || |||   |||||| |||| ||||||||||||| ||||    
T  16833366 aacaccgacacttgtaattacactgaagtatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtctgtgt 16833289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 18367893 - 18367828
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtc 67  Q
    |||||||||||||||||||||| | ||| ||||||||  ||||||| |||| | |||| |||||||    
T  18367893 acaccgacacatataattacactgcattttgtgattttctaaaaaaattagctgtgtcggcgtgtc 18367828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 7086852 - 7086816
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    ||||||||||||||||||||||  |||||||||||||    
T  7086852 acaccgacacatataattacactaaattatgtgattt 7086816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 7378036 - 7378000
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||||||  ||||||||||||||    
T  7378036 acaccgacacatataattacattgaattatgtgattt 7378000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 8776975 - 8777051
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 78  Q
    ||||| |||| | ||||||||| ||||| |||||||| || |||   |||||| |||| ||||||||||||||||||    
T  8776975 acaccaacacttgtaattacactgaattttgtgattttttcaaattattagttgtgtcggcgtgtcagtgtccgtgt 8777051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 9617491 - 9617455
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||||||  ||||||||||||||    
T  9617491 acaccgacacatataattacattgaattatgtgattt 9617455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 9629440 - 9629404
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||||||  ||||||||||||||    
T  9629440 acaccgacacatataattacattgaattatgtgattt 9629404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 97
Target Start/End: Original strand, 10770676 - 10770776
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtcc-----gtgttcatatccgtgcttcata 96  Q
    |||||||||| | ||||||||| |||||||||||||| || |||   |||||| |||  ||||||||||||||     |||| | |||||||||||||||    
T  10770676 acaccgacacttgtaattacactgaattatgtgattttttcaaattattagttgtgttggcgtgtcagtgtccatgtcgtgtccgtatccgtgcttcata 10770775  T
Q  97 g 97  Q
    |    
T  10770776 g 10770776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 11591876 - 11591908
Alignment:
Q  6 cgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||| ||||||||||||||    
T  11591876 cgacacatataattacactgaattatgtgattt 11591908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 13360374 - 13360410
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  13360374 acaccgaaacatataattacactgaattatgtgattt 13360410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 16766754 - 16766682
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtcc 74  Q
    |||||||||| | ||||||||| |||||||||||||| || |||   |||| | |||| ||||||||||||||    
T  16766754 acaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtcc 16766682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 19040409 - 19040373
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  19040409 acacagacacatataattacactgaattatgtgattt 19040373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 26562742 - 26562710
Alignment:
Q  6 cgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||| ||||||||||||||    
T  26562742 cgacacatataattacactgaattatgtgattt 26562710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 6401555 - 6401479
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 78  Q
    |||||||||||||||||||||| | ||| ||||||||  |||||||||||||| |||| ||||||| ||||||||||    
T  6401555 acaccgacacatataattacactgtattttgtgattttctaaaaaatttagttgtgtcggcgtgtcggtgtccgtgt 6401479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 30099040 - 30099105
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtc 67  Q
    |||||||||||||||||||||| |||||||| ||||  ||||||||||||||| |||| |||||||    
T  30099040 acaccgacacatataattacacagaattatgcgattgtttaaaaaatttagttgtgtcggcgtgtc 30099105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 39758327 - 39758279
Alignment:
Q  4 accgacacatataattacaccgaattatgtgatttcttaaaaaatttag 52  Q
    |||||||||||||||||||| ||||||||||||||  ||||||||||||    
T  39758327 accgacacatataattacactgaattatgtgattttctaaaaaatttag 39758279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 14674323 - 14674231
Alignment:
Q  5 ccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgttcatatccgtgcttcatag 97  Q
    ||||||| | |||||||||  ||||||||||||| || |||   |||| | |||| ||||||||||||||||||   ||||||||||||||||    
T  14674323 ccgacacttgtaattacactaaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtctgtatccgtgcttcatag 14674231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 32426871 - 32426921
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttag 52  Q
    ||||||||||| |||||||||  ||||||||||||||  ||||||||||||    
T  32426871 acaccgacacaaataattacaatgaattatgtgattttctaaaaaatttag 32426921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 39698598 - 39698524
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgt 76  Q
    |||| ||||| | ||||||||| |||||||||||||| || |||   |||| | |||||||||||||||||||||    
T  39698598 acactgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcagcgtgtcagtgtccgt 39698524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 21814318 - 21814253
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtc 67  Q
    |||||||||||||||||||||| | ||| ||||||||  ||||||| |||| | |||| |||||||    
T  21814318 acaccgacacatataattacactgcattttgtgattttctaaaaaaattagctgtgtcggcgtgtc 21814253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 2436979 - 2436943
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  2436979 acaccgacacatataatcacaacgaattatgtgattt 2436943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 3966560 - 3966524
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  3966560 acaccgacacatataattacactgaattgtgtgattt 3966524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 6471891 - 6471927
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  6471891 acacccacacatataattacactgaattatgtgattt 6471927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 21191058 - 21191134
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 78  Q
    |||||||||| | ||||||||| |||||||||||||| || |||   |||| | |||| || |||||||||||||||    
T  21191058 acaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcatgtcagtgtccgtgt 21191134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 21522807 - 21522731
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 78  Q
    |||||||||  | ||||||||| ||||||||| |||| ||||||   |||| | |||| ||||||||||||||||||    
T  21522807 acaccgacaattgtaattacactgaattatgttattttttaaaattattagctgtgtcggcgtgtcagtgtccgtgt 21522731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 21533373 - 21533297
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 78  Q
    |||||||||  | ||||||||| ||||||||| |||| ||||||   |||| | |||| ||||||||||||||||||    
T  21533373 acaccgacaattgtaattacactgaattatgttattttttaaaattattagctgtgtcggcgtgtcagtgtccgtgt 21533297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 28588676 - 28588712
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  28588676 acaccgacacctataattacactgaattatgtgattt 28588712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 30502390 - 30502426
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||||||| |||||| |||||||    
T  30502390 acaccgacacatataattacactgaattaagtgattt 30502426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 30542733 - 30542769
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||||||| |||||| |||||||    
T  30542733 acaccgacacatataattacactgaattaagtgattt 30542769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 41091263 - 41091295
Alignment:
Q  6 cgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||| ||||||||||||||    
T  41091263 cgacacatataattacactgaattatgtgattt 41091295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 34315767 - 34315693
Alignment:
Q  4 accgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 78  Q
    ||||||||||||||||||||||||||||||  ||| ||||||||||||| | |||| || ||||||| |||||||    
T  34315767 accgacacatataattacaccgaattatgtagttttttaaaaaatttagctgtgtcggcatgtcagtatccgtgt 34315693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 1815314 - 1815240
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgt 76  Q
    |||||||||| | ||||||||| |||||||||||||| |||||| | ||| || |||| ||||||||||||||||    
T  1815314 acaccgacacttgtaattacactgaattatgtgattttttaaaataattatttgtgtcggcgtgtcagtgtccgt 1815240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 1486711 - 1486787
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 78  Q
    |||||||||| ||||||||||| |||||||||||||| || |||   |||| | ||||||||||||||| |||||||    
T  1486711 acaccgacacttataattacactgaattatgtgattttttcaaattattagctgtgtcagcgtgtcagtatccgtgt 1486787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 46348385 - 46348479
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgttcatatccgtgcttcata 96  Q
    |||||||||| | |||||||||  |||||| |||||| || |||   |||| | |||| |||||||||||||||||| | |||||||||||||||    
T  46348385 acaccgacacttgtaattacactaaattatatgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatccgtgcttcata 46348479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1864881 - 1864918
Alignment:
Q  1 aacaccgacacatataattacaccgaattatgtgattt 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  1864881 aacaccgacacatataattacactgaattatgtgattt 1864918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 10572590 - 10572627
Alignment:
Q  1 aacaccgacacatataattacaccgaattatgtgattt 38  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  10572590 aacaccgacacatttaattacaccgaattatgtgattt 10572627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 10577740 - 10577813
Alignment:
Q  5 ccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 78  Q
    ||||||||||||||||||| | ||| ||||||||  ||||||| |||| | |||| ||||||| ||||||||||    
T  10577740 ccgacacatataattacactgcattttgtgattttctaaaaaaattagctgtgtcggcgtgtcggtgtccgtgt 10577813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 13997941 - 13997904
Alignment:
Q  1 aacaccgacacatataattacaccgaattatgtgattt 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  13997941 aacaccgacacatataattacactgaattatgtgattt 13997904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 30749897 - 30749852
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaa 47  Q
    |||||||||||||||||||||| ||||||||||||||  |||||||    
T  30749897 acaccgacacatataattacactgaattatgtgattttctaaaaaa 30749852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 30771348 - 30771303
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaa 47  Q
    |||||||||||||||||||||| ||||||||||||||  |||||||    
T  30771348 acaccgacacatataattacactgaattatgtgattttctaaaaaa 30771303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 42359451 - 42359528
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgtt 79  Q
    |||||||||| | ||||||||| ||||| |||||||| || |||   |||| | ||||||||||||||||||||||||    
T  42359451 acaccgacacttgtaattacactgaattttgtgattttttcaaattattagatgtgtcagcgtgtcagtgtccgtgtt 42359528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 9709877 - 9709841
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    ||||||||||||||||||||| |||||||||||||||    
T  9709877 acaccgacacatataattacaacgaattatgtgattt 9709841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 25934671 - 25934572
Alignment:
Q  4 accgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtca------gtgtccgtgttcatatccgtgcttcatag 97  Q
    |||||||||||||||||||| | ||| ||||||||  || ||||||||| | |||| ||||||||      |||||||||| | ||||||||||||||||    
T  25934671 accgacacatataattacactgtattttgtgattttctagaaaatttagctgtgtcggcgtgtcatgtccggtgtccgtgtccgtatccgtgcttcatag 25934572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 34371770 - 34371734
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||||||| ||||||||||||||    
T  34371770 acaccgacacatataattacactgaattatgtgattt 34371734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 44482287 - 44482251
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||||||| ||||||||||||||    
T  44482287 acaccgacacatataattacactgaattatgtgattt 44482251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 24577188 - 24577259
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtc 73  Q
    |||||||||| | ||||||||| |||||||||||||| || |||   |||||| |||||||||||| |||||    
T  24577188 acaccgacacttgtaattacactgaattatgtgattttttcaaattattagttgtgtcagcgtgtccgtgtc 24577259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10233311 - 10233274
Alignment:
Q  1 aacaccgacacatataattacaccgaattatgtgattt 38  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  10233311 aacacagacacatataattacactgaattatgtgattt 10233274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 13436515 - 13436478
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttc 39  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  13436515 acaccaacacatataattacactgaattatgtgatttc 13436478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 37598888 - 37598816
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccg 75  Q
    |||||||||| ||||||||||| ||||| |||||||| || |||   |||||| |||| |||||||||||||||    
T  37598888 acaccgacacttataattacactgaatt-tgtgattttttcaaattattagttgtgtcggcgtgtcagtgtccg 37598816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 5898268 - 5898304
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  5898268 acaccgacgcatataattacactgaattatgtgattt 5898304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 5944340 - 5944304
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  5944340 acaccgacacttataattacactgaattatgtgattt 5944304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 7918213 - 7918249
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  7918213 acactgacacatataattacactgaattatgtgattt 7918249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 9828101 - 9828065
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  9828101 acaccgacacataaaattacactgaattatgtgattt 9828065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 97
Target Start/End: Original strand, 10475058 - 10475086
Alignment:
Q  69 gtgtccgtgttcatatccgtgcttcatag 97  Q
    |||||||||||||||||||||||||||||    
T  10475058 gtgtccgtgttcatatccgtgcttcatag 10475086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 17705592 - 17705624
Alignment:
Q  6 cgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||| ||||||||||||||    
T  17705592 cgacacatataattacactgaattatgtgattt 17705624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 20157352 - 20157388
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  20157352 acaccgacacatatgattacactgaattatgtgattt 20157388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 25361943 - 25361907
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  25361943 acactgacacatataattacactgaattatgtgattt 25361907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 28273090 - 28273162
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtcc 74  Q
    |||||||||| | ||||||||| ||||||| |||||| || |||   |||||| ||||||| |||||||||||    
T  28273090 acaccgacacttgtaattacactgaattatatgattttttcaaatgattagttgtgtcagcatgtcagtgtcc 28273162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 36878518 - 36878482
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  36878518 acaccgacacctataattacactgaattatgtgattt 36878482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 40181928 - 40181892
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  40181928 acaccgatacatataattacactgaattatgtgattt 40181892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 43492496 - 43492532
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  43492496 acaccgacacacataattacaccgaattacgtgattt 43492532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 52903306 - 52903270
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  52903306 acaccgacacatataattacactgaattatatgattt 52903270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 18213035 - 18213112
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtga-tttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 78  Q
    ||||||||||||||||||||||  |||||||||| ||||| |||||| |||||| |||| |||| |||||||||||||    
T  18213035 acaccgacacatataattacactaaattatgtgattttctaaaaaaaattagttgtgtcggcgtatcagtgtccgtgt 18213112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 640170 - 640126
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaa 46  Q
    |||||||||||||||||||||| |||||||||||||| |||||||    
T  640170 acaccgacacatataattacactgaattatgtgatttgttaaaaa 640126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 97
Target Start/End: Complemental strand, 15680866 - 15680771
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgttcatatccgtgcttcatag 97  Q
    |||||||||| |||||||||||  ||||||||||||| ||  ||   |||| | |||| |||||||||||||| ||| | ||||||||||||||||    
T  15680866 acaccgacacttataattacactaaattatgtgattttttttaattattagctatgtcggcgtgtcagtgtccatgtccgtatccgtgcttcatag 15680771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 39138501 - 39138451
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttag 52  Q
    ||||||||| |||||||||||| ||||||||||||||  ||||||||||||    
T  39138501 acaccgacatatataattacactgaattatgtgattttctaaaaaatttag 39138451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 1656721 - 1656676
Alignment:
Q  14 ataattacaccgaattatgtgatttcttaaaaaatttagttttgtc 59  Q
    |||||||||| |||||||||||||| ||||||||||||||| ||||    
T  1656721 ataattacactgaattatgtgattttttaaaaaatttagttgtgtc 1656676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 22602712 - 22602748
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||||||| ||||||||||||||    
T  22602712 acaccgacacatataattacactgaattatgtgattt 22602748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 15902880 - 15902843
Alignment:
Q  1 aacaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||||||||  |||||||||||||    
T  15902880 aacaccgacacatataattacactaaattatgtgattt 15902843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 17851489 - 17851452
Alignment:
Q  1 aacaccgacacatataattacaccgaattatgtgattt 38  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  17851489 aacacagacacatataattacactgaattatgtgattt 17851452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 1433511 - 1433475
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  1433511 acaccgacacatataattacaccaaatgatgtgattt 1433475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 5835304 - 5835268
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  5835304 acaccgacacatataattacactgaattatgttattt 5835268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 9482991 - 9482955
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  9482991 acaccgacacatataattacactgaattgtgtgattt 9482955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 18013076 - 18013152
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 78  Q
    |||| ||||||||||||||||| ||||||||| |||| || |||   |||||  ||||||  |||||||||||||||    
T  18013076 acactgacacatataattacactgaattatgtaatttttttaaattattagtagtgtcagaatgtcagtgtccgtgt 18013152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 20549848 - 20549812
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||||||| |||||| |||||||    
T  20549848 acaccgacacatataattacactgaattacgtgattt 20549812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 2 - 97
Target Start/End: Original strand, 36450756 - 36450851
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgttcatatccgtgcttcatag 97  Q
    ||||| |||| | ||||||||| ||||| |||||||| || |||   |||||| |||| |||||||||||||||||| | ||||||||||||||||    
T  36450756 acacctacacttgtaattacactgaattctgtgattttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtccgtatccgtgcttcatag 36450851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 97
Target Start/End: Complemental strand, 14134756 - 14134661
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgttcatatccgtgcttcatag 97  Q
    ||||||||| |||||||||||| ||||||||||||||  | |||   ||||| |||||  |||||| ||||| |||| | ||||||||||||||||    
T  14134756 acaccgacatatataattacactgaattatgtgattttctcaaattattagtattgtcgacgtgtccgtgtcggtgtccgtatccgtgcttcatag 14134661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 15816131 - 15816205
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgt 76  Q
    |||||||||| |||||||||||  ||||||||||||| || |||   |||||| |||| ||||||||||||||||    
T  15816131 acaccgacacttataattacactaaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtccgt 15816205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 4786340 - 4786376
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||||||| ||||||||||||||    
T  4786340 acaccgacacatataattacactgaattatgtgattt 4786376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 8847313 - 8847277
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||||||| ||||||||||||||    
T  8847313 acaccgacacatataattacactgaattatgtgattt 8847277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 11927088 - 11927124
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||||||| ||||||||||||||    
T  11927088 acaccgacacatataattacactgaattatgtgattt 11927124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 18964234 - 18964182
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagtt 54  Q
    |||||||||||||||||||||  ||||||||||||||  ||||||| ||||||    
T  18964234 acaccgacacatataattacattgaattatgtgattttctaaaaaaattagtt 18964182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 26902177 - 26902213
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||||||| ||||||||||||||    
T  26902177 acaccgacacatataattacactgaattatgtgattt 26902213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 98
Target Start/End: Original strand, 31109574 - 31109616
Alignment:
Q  56 tgtcagcgtgtcagtgtccgtgttcatatccgtgcttcataga 98  Q
    |||| |||||||||||||||||| |||||| ||||||||||||    
T  31109574 tgtcggcgtgtcagtgtccgtgtccatatcagtgcttcataga 31109616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 11803317 - 11803280
Alignment:
Q  1 aacaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  11803317 aacaccaacacatataattacactgaattatgtgattt 11803280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 3677844 - 3677800
Alignment:
Q  1 aacaccgacacatataattacaccgaattatgtgatttcttaaaa 45  Q
    |||||||| |||||||||||||  |||||||||||||| ||||||    
T  3677844 aacaccgatacatataattacatagaattatgtgattttttaaaa 3677800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 11944722 - 11944686
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||||||| || |||||||||||    
T  11944722 acaccgacacatataattacactgagttatgtgattt 11944686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 13844598 - 13844634
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    ||||||||||||||||||||||  |||||||||||||    
T  13844598 acaccgacacatataattacactcaattatgtgattt 13844634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 22493552 - 22493508
Alignment:
Q  1 aacaccgacacatataattacaccgaattatgtgatttcttaaaa 45  Q
    |||||||||| |||| ||||||| |||||||||||||| ||||||    
T  22493552 aacaccgacatatatgattacactgaattatgtgattttttaaaa 22493508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 28384996 - 28385032
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||||||| |||||||| |||||    
T  28384996 acaccgacacatataattacactgaattatgagattt 28385032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 34451039 - 34451115
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 78  Q
    |||||||||||||||||||||| | ||| ||||||||   |||||| |||| | |||||| ||||| ||| ||||||    
T  34451039 acaccgacacatataattacactgcattttgtgattttcaaaaaaaattagctgtgtcagtgtgtcggtgcccgtgt 34451115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 34897138 - 34897106
Alignment:
Q  6 cgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||| ||||||||||||||    
T  34897138 cgacacatataattacactgaattatgtgattt 34897106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 35222995 - 35222924
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtc 73  Q
    |||||||||||||||||||||  ||||||||||||||  ||||||  |||||| |||| ||||||| |||||    
T  35222995 acaccgacacatataattacattgaattatgtgattttctaaaaatgttagttgtgtcggcgtgtctgtgtc 35222924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 18427006 - 18426932
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgt 76  Q
    ||||||||| ||||||||||||||||||||||||||| || |||   |||||  |||| ||||||| ||||||||    
T  18427006 acaccgacatatataattacaccgaattatgtgattttttgaaattattagtggtgtcggcgtgtccgtgtccgt 18426932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 7928507 - 7928471
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||||||| ||||||||||||||    
T  7928507 acaccgacacatataattacactgaattatgtgattt 7928471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 8789552 - 8789588
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||||||| ||||||||||||||    
T  8789552 acaccgacacatataattacacggaattatgtgattt 8789588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 40993337 - 40993373
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||||||| ||||||||||||||    
T  40993337 acaccgacacatataattacactgaattatgtgattt 40993373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 8930836 - 8930875
Alignment:
Q  6 cgacacatataattacaccgaattatgtgatttcttaaaa 45  Q
    ||||||||||||||||| ||||||||||||||| ||||||    
T  8930836 cgacacatataattacatcgaattatgtgattttttaaaa 8930875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 20503523 - 20503429
Alignment:
Q  1 aacaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgttcatatccgtgcttcata 96  Q
    ||||||||||| | ||||||||| ||||||||| |||| || |||   || ||| |||| |||||||||||| ||||| | |||||||||||||||    
T  20503523 aacaccgacacttgtaattacactgaattatgtcattttttcaaattatttgttgtgtcggcgtgtcagtgt-cgtgtccgtatccgtgcttcata 20503429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 38731275 - 38731232
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaa 45  Q
    |||||||||||||||| ||||| |||||||||||||| ||||||    
T  38731275 acaccgacacatataactacactgaattatgtgattttttaaaa 38731232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 13845527 - 13845576
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaattta 51  Q
    |||||||||||||||||||||| | ||| ||||||||  |||||||||||    
T  13845527 acaccgacacatataattacactgcattttgtgattttctaaaaaattta 13845576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 8842386 - 8842350
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  8842386 acaccgacatatataattacaccaaattatgtgattt 8842350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 10955009 - 10954933
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 78  Q
    |||||||||| | | ||||||| |||||||||||||| || |||   |||||| |||| |||||||||||| |||||    
T  10955009 acaccgacacttgtgattacactgaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgttcgtgt 10954933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 14209170 - 14209079
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgttcatatccgtgcttca 94  Q
    |||| ||||| | ||||||||| |||||||||||||| ||||||   |||||| |||| ||||||| ||||| |||| |  ||||||||||||    
T  14209170 acactgacacttgtaattacactgaattatgtgattttttaaaattattagttgtgtcggcgtgtc-gtgtctgtgtccgcatccgtgcttca 14209079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 25093559 - 25093523
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  25093559 acaccgacacatataattacactgaattgtgtgattt 25093523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 97
Target Start/End: Complemental strand, 28812572 - 28812477
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccg-tgttcatatccgtgcttcatag 97  Q
    |||||||||| | ||| ||||| ||||||||||||||||| |||   |||||| |||| ||||||| ||||||| |||   ||||||||||||||||    
T  28812572 acaccgacacttgtaactacactgaattatgtgatttcttcaaattattagttgtgtcggcgtgtc-gtgtccgttgtctgtatccgtgcttcatag 28812477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 28918058 - 28917982
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 78  Q
    |||||||||| | ||||||||| |||||||||||||| || |||   |||| | |||| |||||||||| |||||||    
T  28918058 acaccgacacttgtaattacactgaattatgtgattttttcaaattattagctatgtcggcgtgtcagtttccgtgt 28917982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 55401132 - 55401056
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 78  Q
    |||||||||| | |||||||||  ||||||||||||| || |||   |||||| |||| |||| |||||||||||||    
T  55401132 acaccgacacttgtaattacactaaattatgtgattttttcaaattattagttgtgtcggcgtatcagtgtccgtgt 55401056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 135314 - 135350
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||||||| ||||||||||||||    
T  135314 acaccgacacatataattacacagaattatgtgattt 135350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 5414174 - 5414250
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 78  Q
    ||||||| |||||||||||||| | ||| ||||||||  ||||||| |||| | |||| ||||||| ||||||||||    
T  5414174 acaccgatacatataattacactgcattttgtgattttctaaaaaaattagctgtgtcggcgtgtccgtgtccgtgt 5414250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 12797340 - 12797415
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 78  Q
    |||||||||| | ||||||||| |||||||||||||| || |||   ||||||||| | ||||||||||||||||||    
T  12797340 acaccgacacttgtaattacactgaattatgtgattt-ttcaaattattagttttgccggcgtgtcagtgtccgtgt 12797415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 18576039 - 18576075
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    ||||| |||||||||||||||||||||||||||||||    
T  18576039 acaccaacacatataattacaccgaattatgtgattt 18576075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 40179638 - 40179714
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 78  Q
    |||||||| ||||||||||||| |||||||||||||| || |||   ||| |  ||||| |||||||||||||||||    
T  40179638 acaccgacgcatataattacactgaattatgtgattttttcaaactattaatggtgtcaacgtgtcagtgtccgtgt 40179714  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 95
Target Start/End: Complemental strand, 30299004 - 30298910
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaat-ttagttttgtcagcgtgtcagtgtccgtgttcatatccgtgcttcat 95  Q
    |||||||||| | ||||||||| ||||||||| |||| ||  ||| | |||| | |||| |||||||||||||||||| | |||| |||||||||    
T  30299004 acaccgacacttgtaattacactgaattatgtcatttttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatctgtgcttcat 30298910  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 95
Target Start/End: Complemental strand, 30327872 - 30327778
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaat-ttagttttgtcagcgtgtcagtgtccgtgttcatatccgtgcttcat 95  Q
    |||||||||| | ||||||||| ||||||||| |||| ||  ||| | |||| | |||| |||||||||||||||||| | |||| |||||||||    
T  30327872 acaccgacacttgtaattacactgaattatgtcatttttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatctgtgcttcat 30327778  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 54580025 - 54580087
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgt 64  Q
    |||||||||| ||||||||||| |||||||||||||| || |||   |||||| |||||||||    
T  54580025 acaccgacacttataattacactgaattatgtgattttttcaaattattagttgtgtcagcgt 54580087  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 35157987 - 35158064
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgtt 79  Q
    |||||||||| |||||||||||  ||||||||||||| |  |||   ||||||  ||| |||||||||||||||||||    
T  35157987 acaccgacacttataattacactaaattatgtgatttttccaaattattagttgcgtcggcgtgtcagtgtccgtgtt 35158064  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 40613504 - 40613471
Alignment:
Q  5 ccgacacatataattacaccgaattatgtgattt 38  Q
    ||||||||||||||||||| ||||||||||||||    
T  40613504 ccgacacatataattacactgaattatgtgattt 40613471  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 5775360 - 5775396
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    ||||||||||||||||||||||  |||||||||||||    
T  5775360 acaccgacacatataattacacttaattatgtgattt 5775396  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 15659762 - 15659798
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  15659762 acaccaacacatataattacaccgaattatgagattt 15659798  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 19482725 - 19482649
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 78  Q
    ||||| |||| | |||||||||||||||||||||| | || |||   |||||| |||| ||||||||||||| ||||    
T  19482725 acaccaacacttgtaattacaccgaattatgtgatattttcaaattattagttgtgtcggcgtgtcagtgtctgtgt 19482649  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 22234892 - 22234928
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  22234892 acaccgacacatagaattacactgaattatgtgattt 22234928  T

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Target: scaffold0123 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 44529 - 44563
Alignment:
Q  4 accgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||||| ||||||||||||||    
T  44529 accgacacatataattacactgaattatgtgattt 44563  T

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Target: scaffold0623 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 5998 - 6070
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtcc 74  Q
    |||||||||||||||||||||| | ||| ||||||||  ||||||| |||| | | || ||||||| ||||||    
T  5998 acaccgacacatataattacactgcattttgtgattttctaaaaaaattagatgtatcggcgtgtcggtgtcc 6070  T

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Target: scaffold0171 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 23477 - 23441
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  23477 acaccgacacttataattacactgaattatgtgattt 23441  T

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Target: scaffold0116 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 9955 - 9883
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtcc 74  Q
    |||||||||||||||||||||| | ||| | ||||||  ||||||| |||| | |||| ||||||| ||||||    
T  9955 acaccgacacatataattacactgcattttatgattttctaaaaaaattagctgtgtcggcgtgtcggtgtcc 9883  T

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Target: scaffold0036 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 9749 - 9785
Alignment:
Q  2 acaccgacacatataattacaccgaattatgtgattt 38  Q
    |||||||||||||||||||||| |||||| |||||||    
T  9749 acaccgacacatataattacactgaattaagtgattt 9785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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