View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13706_low_5 (Length: 572)
Name: NF13706_low_5
Description: NF13706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13706_low_5 |
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| [»] scaffold0257 (1 HSPs) |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 516; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 13 - 556
Target Start/End: Complemental strand, 3568291 - 3567748
Alignment:
| Q |
13 |
cagacgaagaacatttttcttgattaacatcaacagtcgcagtggacaaaggtgttgtcacttccacatgcttaatgggaacaaaaatttattcatcctc |
112 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3568291 |
cagacgaagaagatttttcttgattaacatcaacagtcgcagtggacaaaggtgttgtcacttccacatgcttaatgggaacaaaaatttattcatcctc |
3568192 |
T |
|
| Q |
113 |
caccttcttctttcctttgtctttgtcgcgagaaggctctgggatgcaaccacttacaatttgaaatgttatgaccaataacataacaatgatgacaaaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3568191 |
caccttcttctttcctttgtctttgtcgcgagaaggctctgggatacaaccacttacaatttgaaatgttatgaccaatgacataacaatgatgacaaaa |
3568092 |
T |
|
| Q |
213 |
aagaggcatgcgctcatactgcatatctactttgaaagaaaaaccctgccgccccacaaggatttcatcatacacacgcttagataggtcaatatccacc |
312 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3568091 |
aagaggcatgcgctcatactgcatatctactttgaaagaaaaaccctgccgctccacaaggatttcatcatacacacgcttagataggtcaatatccacc |
3567992 |
T |
|
| Q |
313 |
aaaattcgtgcataatgtttgaatgccctattccgagtcggggcatctataacaatcggagtacccacgacacttgctatttccatcaacgtgcgttccc |
412 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3567991 |
aaaattcgtgcataatgtttgaaggccctattccgagtcggggcatctataacaatcggagtacccacgacacttgctatttccatcaacgtgcgttccc |
3567892 |
T |
|
| Q |
413 |
accgatgttcctgaggcaacacaaccagcctaatccaaagtgaagcatgtgtctatttatgagaattgtggttaaaatcctttgtccattgagagagacg |
512 |
Q |
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||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3567891 |
accaatattcctgaggcaacacaaccagcctaatccaaagtgaagcatgtgtctatttatgagaattgtggttaaaatcctttgtccattgagagagacg |
3567792 |
T |
|
| Q |
513 |
aagaaggctcggttgtagagaaacagtgccagccacccaaatac |
556 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3567791 |
aagaaggctcggttgtagagaaacagtgccagccacccaaatac |
3567748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 266 - 386
Target Start/End: Original strand, 32239235 - 32239357
Alignment:
| Q |
266 |
ccacaaggatttcatcatacacacgcttagataggtcaatatccaccaaaattcgtgcataatgtttgaat--gccctattccgagtcggggcatctata |
363 |
Q |
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||||||| ||||||||||| | | ||||||| |||||| ||||||||||||| ||||| ||| ||||| |||||||| || ||||||||||||| | |
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| T |
32239235 |
ccacaagaatttcatcataggctcttttagataagtcaatgtccaccaaaattctcgcatagtgtctgaattagccctatttcgtgtcggggcatctaaa |
32239334 |
T |
|
| Q |
364 |
acaatcggagtacccacgacact |
386 |
Q |
| |
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| ||||||||||| || ||||| |
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| T |
32239335 |
tctatcggagtaccaacaacact |
32239357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 266 - 556
Target Start/End: Complemental strand, 24372011 - 24371721
Alignment:
| Q |
266 |
ccacaaggatttcatcatacacacgcttagataggtcaatatccaccaaaattcgtgcataatgtttgaatgccctattccgagtcggggcatctataac |
365 |
Q |
| |
|
||||||| |||||||||| | | |||||| | |||||| |||||||||||| |||||||||| |||| |||||||| |||||||||||||||| | |
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| T |
24372011 |
ccacaagaatttcatcatcggccctcttagacaagtcaatgtccaccaaaatttatgcataatgtctgaaggccctattacgagtcggggcatctagggc |
24371912 |
T |
|
| Q |
366 |
aatcggagtacccacgacacttgctatttccatcaacgtgcgttcccaccgatgttcctgaggcaacacaaccagcctaatccaaagtgaagcatgtgtc |
465 |
Q |
| |
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|||| |||||||||| |||||||||||||| ||||| | ||| | || | ||||||||||||| ||| ||| | ||||| | |||| |||||| |
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| T |
24371911 |
aatcagagtacccaccgcacttgctatttccttcaacattatttctcgccagtattcctgaggcaactaaactagcttgatccagatcgaagtatgtgtt |
24371812 |
T |
|
| Q |
466 |
tatttatgagaattgtggttaaaatcctttgtccattgagagagacgaagaaggctcggttgtagagaaacagtgccagccacccaaatac |
556 |
Q |
| |
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| ||| ||||| ||||| |||||||| || ||||||||||| ||||||| || | | |||||||||||| |||||| || ||||||||| |
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| T |
24371811 |
tgtttttgagagttgtgattaaaatctttcatccattgagagggacgaaggagacccagttgtagagaaatggtgccaacctcccaaatac |
24371721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 326
Target Start/End: Original strand, 14385152 - 14385290
Alignment:
| Q |
188 |
caataacataacaatgatgacaaaaaagaggcatgcgctcatactgcatatctactttgaaagaaaaaccctgccgccccacaaggatttcatcatacac |
287 |
Q |
| |
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|||| |||||||||||||||||||| | ||| | ||||| |||| ||||| || |||| |||||||| ||| | ||||||||||||||||| || |
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| T |
14385152 |
caatgacataacaatgatgacaaaacaaaggacgtctttcatattgcacttctacgttaaaagcaaaaccctcccgttcaacaaggatttcatcataaac |
14385251 |
T |
|
| Q |
288 |
acgcttagataggtcaatatccaccaaaattcgtgcata |
326 |
Q |
| |
|
||||| |||| |||||| ||||| | ||| |||||||| |
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| T |
14385252 |
ccgcttcgataagtcaatgtccacaagaatgcgtgcata |
14385290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 268 - 546
Target Start/End: Original strand, 45270331 - 45270609
Alignment:
| Q |
268 |
acaaggatttcatcatacacacgcttagataggtcaatatccaccaaaattcgtgcataatgtttgaatgccctattccgagtcggggcatctataacaa |
367 |
Q |
| |
|
||||| ||||| ||||| || ||||| |||| ||| || |||| | ||| |||||||| ||| |||||| ||||| | ||||| |||| ||| || |
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| T |
45270331 |
acaagaatttcgtcatagacccgctttgataagtcgatgtccataagaatgcgtgcatagtgtccgaatgctctatttcctgtcggcccatcaatagaaa |
45270430 |
T |
|
| Q |
368 |
tcggagtacccacgacacttgctatttccatcaacgtgcgttcccaccgatgttcctgaggcaacacaaccagcctaatccaaagtgaagcatgtgtcta |
467 |
Q |
| |
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| |||||||||||||||||||||||||| |||| || | || |||| || ||||||||||||| |||| || || ||||| ||||| |||||||||| |
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| T |
45270431 |
ttggagtacccacgacacttgctatttctttcaaagttctctcacaccaatattcctgaggcaactcaacaagtctgatccatagtgatgcatgtgtctg |
45270530 |
T |
|
| Q |
468 |
tttatgagaattgtggttaaaatcctttgtccattgagagagacgaagaaggctcggttgtagagaaacagtgccagcc |
546 |
Q |
| |
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| ||||| || || ||||||||||| ||||||||||| |||||||| || | ||||||||| || ||||| |||||| |
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|
| T |
45270531 |
tgcctgagagttatgattaaaatccttcgtccattgagaaagacgaaggagacccggttgtagtgatacagtaccagcc |
45270609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 420 - 546
Target Start/End: Complemental strand, 10431639 - 10431513
Alignment:
| Q |
420 |
ttcctgaggcaacacaaccagcctaatccaaagtgaagcatgtgtctatttatgagaattgtggttaaaatcctttgtccattgagagagacgaagaagg |
519 |
Q |
| |
|
||||| ||||||| |||| ||||| ||||| | ||||||||| || | ||| || |||||||||||||| || || ||||||||||||||||||||||| |
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| T |
10431639 |
ttcctaaggcaacgcaactagcctgatccatattgaagcatgagtttgtttttgcgaattgtggttaaagtctttcgtccattgagagagacgaagaaga |
10431540 |
T |
|
| Q |
520 |
ctcggttgtagagaaacagtgccagcc |
546 |
Q |
| |
|
| |||||||||||||||||||||||| |
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|
| T |
10431539 |
cctggttgtagagaaacagtgccagcc |
10431513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 300 - 554
Target Start/End: Complemental strand, 14679 - 14424
Alignment:
| Q |
300 |
gtcaatatccaccaaaattcgtgcataatgtttgaatgccctattccgagtcgggg-catctataacaatcggagtacccacgacacttgctatttccat |
398 |
Q |
| |
|
|||||| ||||||| |||||||||||||||| |||| |||||||| || ||||||| | || | | ||| || ||||||||| | || ||||||| | |
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|
| T |
14679 |
gtcaatgtccaccagaattcgtgcataatgtctgaaggccctattacgtgtcgggggcgtcgagagaaattggggtacccacggcgctacctatttcttt |
14580 |
T |
|
| Q |
399 |
caacgtgcgttcccaccgatgttcctgaggcaacacaaccagcctaatccaaagtgaagcatgtgtctatttatgagaattgtggttaaaatcctttgtc |
498 |
Q |
| |
|
|||||| | || | || || ||| ||||||| | |||| ||||||||||| | ||||||||| |||| ||||||||| |||| | |||| || || ||| |
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|
| T |
14579 |
caacgttctctcacgccaatattcttgaggcagctcaacaagcctaatccatattgaagcatgagtctgtttatgagagttgtagctaaagtctttcgtc |
14480 |
T |
|
| Q |
499 |
cattgagagagacgaagaaggctcggttgtagagaaacagtgccagccacccaaat |
554 |
Q |
| |
|
|||| |||||||||||| || | || ||||| ||||||| ||||||| ||||||| |
|
|
| T |
14479 |
cattaagagagacgaaggagacccgaatgtagtgaaacagagccagccgcccaaat |
14424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 424 - 554
Target Start/End: Complemental strand, 26183387 - 26183257
Alignment:
| Q |
424 |
tgaggcaacacaaccagcctaatccaaagtgaagcatgtgtctatttatgagaattgtggttaaaatcctttgtccattgagagagacgaagaaggctcg |
523 |
Q |
| |
|
||||||||| |||| ||||||||||| | ||||||||| || | ||| |||| ||||||||||| || || |||||||||||||||| ||| || | |
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|
| T |
26183387 |
tgaggcaactcaactagcctaatccatattgaagcatgagtttgtttctgagtgttgtggttaaagtctttcgtccattgagagagacaaagtagaccta |
26183288 |
T |
|
| Q |
524 |
gttgtagagaaacagtgccagccacccaaat |
554 |
Q |
| |
|
|||| || |||| |||||||||| ||||||| |
|
|
| T |
26183287 |
gttgaagtgaaatagtgccagccgcccaaat |
26183257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 329
Target Start/End: Complemental strand, 11483104 - 11483044
Alignment:
| Q |
269 |
caaggatttcatcatacacacgcttagataggtcaatatccaccaaaattcgtgcataatg |
329 |
Q |
| |
|
|||||||||||||| | |||||||| |||| |||||| |||| |||||| | ||||||||| |
|
|
| T |
11483104 |
caaggatttcatcaaaaacacgctttgataagtcaatgtccaacaaaatccttgcataatg |
11483044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 515
Target Start/End: Complemental strand, 100783 - 100746
Alignment:
| Q |
478 |
ttgtggttaaaatcctttgtccattgagagagacgaag |
515 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
100783 |
ttgtggttaaaatccttcgtccattgagagaggcgaag |
100746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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