View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13706_low_9 (Length: 466)
Name: NF13706_low_9
Description: NF13706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13706_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 7904000 - 7904344
Alignment:
| Q |
1 |
cttgtctgcattttaccgctgttgttctcggaagagggtgagttggaaagttcaaagtacagagataaaaatgattcatatcaagaagaaatttatatga |
100 |
Q |
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| T |
7904000 |
cttgtctgcattttaccgctattgttttcggaagagggggagttggaaagttcaaagtacagagataaaaatgattcatatcaagaagaaatttatatga |
7904099 |
T |
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| Q |
101 |
attgaatgaataaaaggagaagaggttacaaggaggtttatatagctccctctgtcattacagttacagctgatatgaatagttctttctaatttggatc |
200 |
Q |
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| T |
7904100 |
attgaatgaataaaaggagaagaggttacaaggaggtttatatagctccctctgtcattacagttacagctgatatgaatagttctttctaatttggatc |
7904199 |
T |
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| Q |
201 |
cactaacaagtggctatgtaaactcagctgatgttggtaagtactgtgctgactcagctagtgtgacta-----ttacccccctcaagctggaggttgaa |
295 |
Q |
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| T |
7904200 |
cactaacaagtggctatgtaaactcagctgatgttggtaagtactgtgctgactcagctagtgtgactattaccttacccctctcaagctggaggttgaa |
7904299 |
T |
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| Q |
296 |
aaatattgatcaaacccagcttggaaatatgatcgtggatgtgga |
340 |
Q |
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| T |
7904300 |
aaatattgatcaatcccagcttggaaatatgatcgtggatgtgga |
7904344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 383 - 466
Target Start/End: Original strand, 7904343 - 7904426
Alignment:
| Q |
383 |
gactatgagaaggaactggaaggaggtgcatcagaccctctttggaccttctctcgaacgatatgacaatcaatatcaagatgt |
466 |
Q |
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| T |
7904343 |
gactatgagaaggaactggaaggaggtgcatcagaccctctttggaccttctctcgaacgatatgacaatcaatatcaagatgt |
7904426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 7896224 - 7896271
Alignment:
| Q |
5 |
tctgcattttaccgctgttgttctcggaagagggtgagttggaaagtt |
52 |
Q |
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| T |
7896224 |
tctgtattttacagctgttgttctcggaagagggtgagttggaaagtt |
7896271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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