View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13707_high_7 (Length: 251)
Name: NF13707_high_7
Description: NF13707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13707_high_7 |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 33255680 - 33255924
Alignment:
| Q |
1 |
atatttcatattgaaagtgcattcgaacatgttcgatgaatcctgtnnnnnnnnnnngaaggatttggtattaatagtggatgattagtcatgaggaaaa |
100 |
Q |
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| T |
33255680 |
atatttcattttgaaagtgcattcgaacatgttcgatgaatcctgtaaaaaaaa---gaaggatttggtattaatagtggatgattagtcatgaggaaaa |
33255776 |
T |
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| Q |
101 |
gtccatccattattacatgttcctaagttaccattgagcattcaaactagatag-----nnnnnnnnnnccttatagaaacaatcacatacgcaagagct |
195 |
Q |
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| T |
33255777 |
gtccatccattattacatgttcctaagttaccattgagcattcaaagtagatagtttttttatttttttccttatagaaacaatcacatacgcaagagct |
33255876 |
T |
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| Q |
196 |
tacatcacttgtcacaaaaagctcaattatgttccttaaaatattctt |
243 |
Q |
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| T |
33255877 |
tacatcacttgtcacaaaaagctcaattatgttccttaaaatattctt |
33255924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 8295954 - 8295906
Alignment:
| Q |
165 |
ccttatagaaacaatcacatacgcaagagcttacatcacttgtcacaaa |
213 |
Q |
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| T |
8295954 |
ccttctagaaagaataacatacgcaagagcttacatcacttgtcacaaa |
8295906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 1 - 41
Alignment:
| Q |
203 |
cttgtcacaaaaagctcaattatgttccttaaaatattctt |
243 |
Q |
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| T |
1 |
cttgtcacaaaaagctcaattatgttccttaaaatattctt |
41 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 48720727 - 48720784
Alignment:
| Q |
59 |
aaggatttggtattaatag-tggatgattagtcatgaggaaaagtccatccattatta |
115 |
Q |
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| T |
48720727 |
aaggatttggtattaatatatggatgataagtcaatagaaaaagtccatccattatta |
48720784 |
T |
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