View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13707_low_1 (Length: 803)
Name: NF13707_low_1
Description: NF13707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13707_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 156 - 641
Target Start/End: Complemental strand, 9562588 - 9562100
Alignment:
| Q |
156 |
attcaaactatcaacaaaccactttttcgtggaagtttatgtttggatttgtctttgtataaatttaatttaatatctggttttaaaatattactgtatg |
255 |
Q |
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| T |
9562588 |
attcaaactataaacaaaccactttttcgtggaagtttatgtttggatttgtcttggtataaatttaatttaatatctggttttaaaatattactgtatg |
9562489 |
T |
|
| Q |
256 |
attttaaaatgtaaaaacttacatacatcacaatcatgaatgttatgtgtgattttttactataaaagtcaaaacatttttaatcattataattgagata |
355 |
Q |
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| T |
9562488 |
attttaaaatgtaaaaacttacatacatcacaatcatcaatgttatgtgtgattttttacgataaaagtgaaa-catttttaatcattataattgaggtg |
9562390 |
T |
|
| Q |
356 |
gattctagggtgagggtt----taaattcatcactggtataccactcgttttaaccattagattaaattagtctataggaaatcattagtcgttgccaca |
451 |
Q |
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| T |
9562389 |
gattctatagtgatggttcaattaaattcatcaccggtataccactcgttttaaccattagattaaattagtctataggaaatcattagtcgttgccaca |
9562290 |
T |
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| Q |
452 |
ctcgatcgttatgttcaaaagcattaaataattaacgagtcattctctctctaaattatcttaccttctctctaagaaaacatatccactgcctttctca |
551 |
Q |
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| T |
9562289 |
ctcgatcgttatgttcaaaagcattaaataattaatgagtccttctctctctaaactatcctaccttctctctaagaaaacatatccaccgcctttctca |
9562190 |
T |
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| Q |
552 |
aatccttaccccttgctatccaaattcgtgtttcttcatcatgtagacattagacttgtggtgatgtgatggatggtgaaagccacccgc |
641 |
Q |
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| T |
9562189 |
aatcctttcccctttctatccaaattcgtgttttttcatcatgtagacatcagacttgtggtgatgcgatggtcggtgatagccacccgc |
9562100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 156 - 328
Target Start/End: Complemental strand, 9570682 - 9570515
Alignment:
| Q |
156 |
attcaaactatcaacaaaccactttttcgtggaagtttatgtttggatttgtctttgtataaatttaatttaatatctggttttaaaatattactgtatg |
255 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
9570682 |
attcaaactataaataaaccactttttcgtggaagtttatgtttggatttgtcttggtataaatttaatttaatatctggttttaaaatat-----tatg |
9570588 |
T |
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| Q |
256 |
attttaaaatgtaaaaacttacatacatcacaatcatgaatgttatgtgtgattttttactataaaagtcaaa |
328 |
Q |
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| T |
9570587 |
attttaaagtgtaaaaacttacatacatcacaatcatcaatgttgtgtgtgactttttacgataaaagtcaaa |
9570515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 673 - 801
Target Start/End: Complemental strand, 9562102 - 9561975
Alignment:
| Q |
673 |
cgccggtggttttggtggatgttgttgtttgcggtttgctgtcatggtgttggctggcgctatttcatctctccgtttcgattttctcgacgcttttctt |
772 |
Q |
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| T |
9562102 |
cgccggtggttttggtggttgttgttgtttgcggtt-gctgtcatggtgttggttggcgctatttcatctctcatattcgattttctcggcgcttttctt |
9562004 |
T |
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| Q |
773 |
tcagtttgagacccaccttggatatagga |
801 |
Q |
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| T |
9562003 |
tcagtttcagacccagcttggatatagga |
9561975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 9562742 - 9562647
Alignment:
| Q |
1 |
atgaatttgtgttgttgtctgtgggccctgaatatatagcatgtgttcatgtttgaattcttatgttatatgctcaaacattttgtgtcaatgtag |
96 |
Q |
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| T |
9562742 |
atgaatttgtgttgttgtctgtgggccctgaatatatagcatgttttcatgtttgaattcttatgttataggctcaaacaatttgtgtcaatgtag |
9562647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 9570842 - 9570747
Alignment:
| Q |
1 |
atgaatttgtgttgttgtctgtgggccctgaatatatagcatgtgttcatgtttgaattcttatgttatatgctcaaacattttgtgtcaatgtag |
96 |
Q |
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| T |
9570842 |
atgaatttgtgttgttgtctgtgggccctgaatatatagcatgtgttcatgtttgaattcttatgttataggctcaaacaatttgtgtcaaggtag |
9570747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 391 - 454
Target Start/End: Complemental strand, 36540036 - 36539973
Alignment:
| Q |
391 |
taccactcgttttaaccattagattaaattagtctataggaaatcattagtcgttgccacactc |
454 |
Q |
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| T |
36540036 |
taccactcttttttaccattagattaaattggtctatagcatatcattagacattgccacactc |
36539973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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