View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13707_low_11 (Length: 250)

Name: NF13707_low_11
Description: NF13707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13707_low_11
NF13707_low_11
[»] chr3 (18 HSPs)
chr3 (16-247)||(2839029-2839260)
chr3 (16-247)||(2856239-2856470)
chr3 (20-247)||(2748480-2748707)
chr3 (20-247)||(2768551-2768778)
chr3 (20-247)||(2789840-2790067)
chr3 (20-247)||(2806743-2806970)
chr3 (76-247)||(2818095-2818266)
chr3 (20-247)||(2796843-2797070)
chr3 (80-247)||(2758756-2758923)
chr3 (16-247)||(5412387-5412616)
chr3 (199-247)||(2755705-2755753)
chr3 (75-169)||(30990142-30990236)
chr3 (124-173)||(22104280-22104329)
chr3 (195-247)||(3200610-3200662)
chr3 (195-247)||(3357786-3357838)
chr3 (103-187)||(22621766-22621850)
chr3 (124-176)||(22631320-22631372)
chr3 (124-176)||(22636357-22636409)
[»] scaffold0691 (1 HSPs)
scaffold0691 (21-247)||(6581-6807)
[»] chr1 (2 HSPs)
chr1 (91-193)||(34975035-34975137)
chr1 (210-247)||(41947635-41947672)


Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 2839260 - 2839029
Alignment:
Q  16 agttaaatggcagagactgcagtattgtttgccctaggggaagtgttcaaattcgtgaaggaagaaacaaatcttctgagaggtgtacacagagattttt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||    
T  2839260 agttaaatggcagagactgcagtattgtttgccctaggggaagtgttcaaattcctaaaagaagaaacaaatcttctgagaggtgtacacagagattttt 2839161  T
Q  116 cagacatcaaagatgaacttgagagtattcaagtcttcctcaaagatgcagatagaagggcagcagatgaagcagacatcaacgatggaataagaacatg 215  Q
    |||| |||||||||||||||||||  |||| ||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||| ||    
T  2839160 cagatatcaaagatgaacttgagatcattctagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacatcaacgatggaataagaacttg 2839061  T
Q  216 ggtgaagcagctgagagaagcatcatttcgca 247  Q
    ||||||||||||||||||||||||||||||||    
T  2839060 ggtgaagcagctgagagaagcatcatttcgca 2839029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 2856470 - 2856239
Alignment:
Q  16 agttaaatggcagagactgcagtattgtttgccctaggggaagtgttcaaattcgtgaaggaagaaacaaatcttctgagaggtgtacacagagattttt 115  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||| | ||| | || ||||||||||||||| ||||||||||||||||||||||||    
T  2856470 agttaaatggcagaaactgcagtattgtttgccctgggggaagtgttccagttcctaaaagaagaaacaaatcttttgagaggtgtacacagagattttt 2856371  T
Q  116 cagacatcaaagatgaacttgagagtattcaagtcttcctcaaagatgcagatagaagggcagcagatgaagcagacatcaacgatggaataagaacatg 215  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||| || ||||||||||||||||| |||||||||||||| ||    
T  2856370 cagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacataagggctgcggatgaagcagacatcaatgatggaataagaacttg 2856271  T
Q  216 ggtgaagcagctgagagaagcatcatttcgca 247  Q
    ||||||||||||||||||||||||||||||||    
T  2856270 ggtgaagcagctgagagaagcatcatttcgca 2856239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 2748480 - 2748707
Alignment:
Q  20 aaatggcagagactgcagtattgtttgccctaggggaagtgttcaaattcgtgaaggaagaaacaaatcttctgagaggtgtacacagagatttttcaga 119  Q
    |||||||||| |||||||||| ||||| ||| |||||||||||| | ||| | || ||||||||||||||||||||| ||||||||||||||||||||||    
T  2748480 aaatggcagaaactgcagtatcgtttgtcctgggggaagtgttccagttcctaaaagaagaaacaaatcttctgagaagtgtacacagagatttttcaga 2748579  T
Q  120 catcaaagatgaacttgagagtattcaagtcttcctcaaagatgcagatagaagggcagcagatgaagcagacatcaacgatggaataagaacatgggtg 219  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || |||||||||||||  ||||||||||||||||| ||||||    
T  2748580 catcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacactaacgatggaataagaacttgggtg 2748679  T
Q  220 aagcagctgagagaagcatcatttcgca 247  Q
    ||||||||||||||||||||||||||||    
T  2748680 aagcagctgagagaagcatcatttcgca 2748707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 2768551 - 2768778
Alignment:
Q  20 aaatggcagagactgcagtattgtttgccctaggggaagtgttcaaattcgtgaaggaagaaacaaatcttctgagaggtgtacacagagatttttcaga 119  Q
    |||||||||| ||||| ||||| ||||| || ||| |||| ||| ||||| | || |||||||||||||| ||||| |||||||||||||||||||||||    
T  2768551 aaatggcagaaactgctgtattatttgctcttgggcaagttttccaattcctaaaagaagaaacaaatctgctgagtggtgtacacagagatttttcaga 2768650  T
Q  120 catcaaagatgaacttgagagtattcaagtcttcctcaaagatgcagatagaagggcagcagatgaagcagacatcaacgatggaataagaacatgggtg 219  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || ||||||||||||| |||||||||||||||||| ||||||    
T  2768651 catcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacaccaacgatggaataagaacttgggtg 2768750  T
Q  220 aagcagctgagagaagcatcatttcgca 247  Q
    ||||||||||||||||||||||||||||    
T  2768751 aagcagctgagagaagcatcatttcgca 2768778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 2789840 - 2790067
Alignment:
Q  20 aaatggcagagactgcagtattgtttgccctaggggaagtgttcaaattcgtgaaggaagaaacaaatcttctgagaggtgtacacagagatttttcaga 119  Q
    |||||||||| ||||||||||| |||| ||| |||||||||||  ||||| | || |||||||||||||| ||||| ||||| |||| |||||||| |||    
T  2789840 aaatggcagaaactgcagtattatttgtcctgggggaagtgttggaattcctaaaagaagaaacaaatctcctgagtggtgtgcacaaagattttttaga 2789939  T
Q  120 catcaaagatgaacttgagagtattcaagtcttcctcaaagatgcagatagaagggcagcagatgaagcagacatcaacgatggaataagaacatgggtg 219  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||| || |||||||||||||||| ||| |||||||||||||| ||||||    
T  2789940 catcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatataagagctgcagatgaagcagacaccaatgatggaataagaacttgggtg 2790039  T
Q  220 aagcagctgagagaagcatcatttcgca 247  Q
    ||||||||||||||||||||||||||||    
T  2790040 aagcagctgagagaagcatcatttcgca 2790067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 2806743 - 2806970
Alignment:
Q  20 aaatggcagagactgcagtattgtttgccctaggggaagtgttcaaattcgtgaaggaagaaacaaatcttctgagaggtgtacacagagatttttcaga 119  Q
    |||||||||| ||||||||||| |||||||| |  |||||||||  |||| | || ||||||||||||||||| | ||||||||||| ||| ||||||||    
T  2806743 aaatggcagaaactgcagtattatttgcccttgatgaagtgttccgattcctaaaagaagaaacaaatcttctaaaaggtgtacacacagaattttcaga 2806842  T
Q  120 catcaaagatgaacttgagagtattcaagtcttcctcaaagatgcagatagaagggcagcagatgaagcagacatcaacgatggaataagaacatgggtg 219  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||  || |||||||| ||||| |||||     
T  2806843 catcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatagaagagcagcagatgaagcagacacaaatgatggaattagaacttgggta 2806942  T
Q  220 aagcagctgagagaagcatcatttcgca 247  Q
    ||||||||| | ||||||||||||||||    
T  2806943 aagcagctgcgcgaagcatcatttcgca 2806970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 76 - 247
Target Start/End: Original strand, 2818095 - 2818266
Alignment:
Q  76 gaagaaacaaatcttctgagaggtgtacacagagatttttcagacatcaaagatgaacttgagagtattcaagtcttcctcaaagatgcagatagaaggg 175  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || || |||||||||||||||||||||||||||||||    
T  2818095 gaagaaacaaagcttctgagaggtgtacacagagatttttcagacatcaaagatgaactagaaagcatccaagtcttcctcaaagatgcagatagaaggg 2818194  T
Q  176 cagcagatgaagcagacatcaacgatggaataagaacatgggtgaagcagctgagagaagcatcatttcgca 247  Q
    ||||||||||||| |||  ||| ||||||||||||||||||||||||||  ||||||| |||||||||||||    
T  2818195 cagcagatgaagcggacgccaatgatggaataagaacatgggtgaagcaagtgagagatgcatcatttcgca 2818266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 2796843 - 2797070
Alignment:
Q  20 aaatggcagagactgcagtattgtttgccctaggggaagtgttcaaattcgtgaaggaagaaacaaatcttctgagaggtgtacacagagatttttcaga 119  Q
    |||||||||| ||| ||||||| |||||||| ||| |||||||  ||||| | || |||||||||||||| |||||  |||| |||| ||||||||||||    
T  2796843 aaatggcagaaacttcagtattatttgccctggggaaagtgtttgaattcctaaaagaagaaacaaatctgctgagtcgtgtgcacaaagatttttcaga 2796942  T
Q  120 catcaaagatgaacttgagagtattcaagtcttcctcaaagatgcagatagaagggcagcagatgaagcagacatcaacgatggaataagaacatgggtg 219  Q
    ||||| ||||||||||||||| |||||||| ||||||||||||||||||| ||| || ||||||||| | |||| ||| |||||||||||||| ||||||    
T  2796943 catcacagatgaacttgagagcattcaagttttcctcaaagatgcagatacaagagctgcagatgaaaccgacaccaatgatggaataagaacttgggtg 2797042  T
Q  220 aagcagctgagagaagcatcatttcgca 247  Q
    ||||| ||||||||||||||||||||||    
T  2797043 aagcatctgagagaagcatcatttcgca 2797070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 80 - 247
Target Start/End: Original strand, 2758756 - 2758923
Alignment:
Q  80 aaacaaatcttctgagaggtgtacacagagatttttcagacatcaaagatgaacttgagagtattcaagtcttcctcaaagatgcagatagaagggcagc 179  Q
    ||||||||||||| ||||||||||||| |||||| | ||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||    
T  2758756 aaacaaatcttctaagaggtgtacacaaagatttcttagacatcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagatagaagggcagc 2758855  T
Q  180 agatgaagcagacatcaacgatggaataagaacatgggtgaagcagctgagagaagcatcatttcgca 247  Q
    |||||||||||| | ||| || |||||||||||||||||||||||  ||||||||||||| |||||||    
T  2758856 agatgaagcagaaaccaatgaaggaataagaacatgggtgaagcatatgagagaagcatcgtttcgca 2758923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 5412387 - 5412616
Alignment:
Q  16 agttaaatggcagagactgcagtattgtttgccctaggggaagtgttcaaattcgtgaaggaagaaacaaatcttctgagaggtgtacacagagattttt 115  Q
    |||||||||||||| |||||||||||||||||||| ||| || ||||| ||||| |  | |||||||||||||  |||| |||| ||||||||  |||||    
T  5412387 agttaaatggcagaaactgcagtattgtttgcccttgggaaactgttccaattcctagaagaagaaacaaatcggctgaaaggtatacacaga--ttttt 5412484  T
Q  116 cagacatcaaagatgaacttgagagtattcaagtcttcctcaaagatgcagatagaagggcagcagatgaagcagacatcaacgatggaataagaacatg 215  Q
    ||||||||||||||||||| || |  ||||||  |||||||||||||||||| | |||||| ||||||||||| |||  ||| |||||||||||||||||    
T  5412485 cagacatcaaagatgaactagaaatcattcaatccttcctcaaagatgcagacaaaagggctgcagatgaagcggacgccaatgatggaataagaacatg 5412584  T
Q  216 ggtgaagcagctgagagaagcatcatttcgca 247  Q
    |||||||||  |||||||||||||||||||||    
T  5412585 ggtgaagcatatgagagaagcatcatttcgca 5412616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 2755705 - 2755753
Alignment:
Q  199 gatggaataagaacatgggtgaagcagctgagagaagcatcatttcgca 247  Q
    |||||||||||||| |||||||||||  |||||||||||||||||||||    
T  2755705 gatggaataagaacttgggtgaagcatatgagagaagcatcatttcgca 2755753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 169
Target Start/End: Complemental strand, 30990236 - 30990142
Alignment:
Q  75 ggaagaaacaaatcttctgagaggtgtacacagagatttttcagacatcaaagatgaacttgagagtattcaagtcttcctcaaagatgcagata 169  Q
    ||||||| | ||||| || |||||||| ||||  || |||||||| || |||||||||||||| || ||||||| ||| || |||||||| ||||    
T  30990236 ggaagaagccaatctgctaagaggtgttcacaaggaattttcagatattaaagatgaacttgaaagcattcaagcctttcttaaagatgctgata 30990142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 22104280 - 22104329
Alignment:
Q  124 aaagatgaacttgagagtattcaagtcttcctcaaagatgcagatagaag 173  Q
    |||||||||||||| || || |||| ||||||||||||||| ||||||||    
T  22104280 aaagatgaacttgaaagcatccaagccttcctcaaagatgctgatagaag 22104329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 3200610 - 3200662
Alignment:
Q  195 caacgatggaataagaacatgggtgaagcagctgagagaagcatcatttcgca 247  Q
    |||||| ||||| | ||| |||||||||||||| ||||||||||| |||||||    
T  3200610 caacgaaggaatcaaaacttgggtgaagcagctaagagaagcatcttttcgca 3200662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 3357838 - 3357786
Alignment:
Q  195 caacgatggaataagaacatgggtgaagcagctgagagaagcatcatttcgca 247  Q
    |||||| ||||| | ||| |||||||||||||| ||||||||||| |||||||    
T  3357838 caacgaaggaatcaaaacttgggtgaagcagctaagagaagcatcttttcgca 3357786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 22621850 - 22621766
Alignment:
Q  103 cacagagatttttcagacatcaaagatgaacttgagagtattcaagtcttcctcaaagatgcagatagaagggcagcagatgaag 187  Q
    |||| ||| ||| ||||||| |||||||||||||| || || |||| |||||| || ||||| |||||||| || |||| |||||    
T  22621850 cacaaagaatttgcagacattaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgcaggtgaag 22621766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 22631372 - 22631320
Alignment:
Q  124 aaagatgaacttgagagtattcaagtcttcctcaaagatgcagatagaagggc 176  Q
    |||||||||||||| || ||| |||||||| |||| ||||| |||||||||||    
T  22631372 aaagatgaacttgaaagaattgaagtcttcatcaacgatgcggatagaagggc 22631320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 22636409 - 22636357
Alignment:
Q  124 aaagatgaacttgagagtattcaagtcttcctcaaagatgcagatagaagggc 176  Q
    |||||||||||||| || ||| |||||||| |||| ||||| |||||||||||    
T  22636409 aaagatgaacttgaaagaattgaagtcttcatcaacgatgcggatagaagggc 22636357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 21 - 247
Target Start/End: Complemental strand, 6807 - 6581
Alignment:
Q  21 aatggcagagactgcagtattgtttgccctaggggaagtgttcaaattcgtgaaggaagaaacaaatcttctgagaggtgtacacagagatttttcagac 120  Q
    ||||||||| |||||||||||||||||||| || ||| ||||| ||||| | ||  |||||||||||||||||||||||||||||| ||||||| |||||    
T  6807 aatggcagaaactgcagtattgtttgccctcggagaattgttccaattcctaaaaaaagaaacaaatcttctgagaggtgtacacacagattttacagac 6708  T
Q  121 atcaaagatgaacttgagagtattcaagtcttcctcaaagatgcagatagaagggcagcagatgaagcagacatcaacgatggaataagaacatgggtga 220  Q
    ||||||||||||||||| || |||||| ||||||||||||||||||| |||| ||| ||||||||||||||||  || |||||||||||||| |||||||    
T  6707 atcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagacagaaaggctgcagatgaagcagacactaatgatggaataagaacttgggtga 6608  T
Q  221 agcagctgagagaagcatcatttcgca 247  Q
    ||||  |||| ||||||||||||||||    
T  6607 agcatatgagggaagcatcatttcgca 6581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 193
Target Start/End: Original strand, 34975035 - 34975137
Alignment:
Q  91 ctgagaggtgtacacagagatttttcagacatcaaagatgaacttgagagtattcaagtcttcctcaaagatgcagatagaagggcagcagatgaagcag 190  Q
    |||| |||||| |||| ||| ||| ||||||| ||| ||||||| || || ||||||| ||||||||||||| | |||||||| || |||| ||||| ||    
T  34975035 ctgaaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagattctgatagaagagctgcagctgaaggag 34975134  T
Q  191 aca 193  Q
    |||    
T  34975135 aca 34975137  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 41947672 - 41947635
Alignment:
Q  210 aacatgggtgaagcagctgagagaagcatcatttcgca 247  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  41947672 aacatgggtgaagcagctgaaagaagcatcttttcgca 41947635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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