View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13707_low_12 (Length: 225)
Name: NF13707_low_12
Description: NF13707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13707_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 29234524 - 29234333
Alignment:
| Q |
14 |
aatatcataaggtttaatttggagaacaattaaatctaatattggtttgtggttaagtttcttgttttagaagataaaaatagtcagagcaaagatttaa |
113 |
Q |
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| T |
29234524 |
aatatcataaggtttaatttggagaacaattaaatctaatattggtttgtggttaagtttcttgttttagaagataaaaatagtcagagcaaagatttaa |
29234425 |
T |
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| Q |
114 |
ataaatgaaatcgaaattgctacgttggatatatatgtatgtatgtatgtacgatttttgtgattgcatacctcatgttcaatggtattgct |
205 |
Q |
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| T |
29234424 |
ataaatgaaatcgaaattgctacgttggatatatatgtatgtatatatgtacgatttttgtgattgcatacctcatgttcaatggtattgct |
29234333 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 43814739 - 43814812
Alignment:
| Q |
50 |
taatattggtttgtggttaagtttcttgttttagaagataaaaat-agtcagagcaaagatttaaataaatgaa |
122 |
Q |
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| T |
43814739 |
taatgttggtttgtgtttaagttttttgctatagaagataaaaataagttggagcaaagatataaataaatgaa |
43814812 |
T |
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