View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13707_low_2 (Length: 542)
Name: NF13707_low_2
Description: NF13707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13707_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 19 - 530
Target Start/End: Original strand, 31089049 - 31089562
Alignment:
| Q |
19 |
ttgtaacatcagtataatgttatgtatgttgtttggtttttatcgtgtttatgataaccatgtatttatcttcctgtaatttgtaatatttatagttgag |
118 |
Q |
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| T |
31089049 |
ttgtaacatcagtataatgttatgtatgttgtttggtttttatcgtgtttatgatatccatgtatgtatcttcctgtaatttgtaatatttatagttgag |
31089148 |
T |
|
| Q |
119 |
ttcttgttattttctattctacatatgcttgtaagatatgaatttgttgtgcatagatgggaaattacacatatatcatatttaaaaaatgtgaatagac |
218 |
Q |
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| T |
31089149 |
ttcttgttattttctattctacatatgcttgtaagatatgaatttgttgtgcatagatgggaaattacacatatatcatatttaaaaaatgtgaatagac |
31089248 |
T |
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| Q |
219 |
atccatacataaaaaacttgcaacacaatccaaaatacttcaacctgcaaaattaagaaggtaatgatggcaaagctaaaccaaaactaaagctgcccct |
318 |
Q |
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| T |
31089249 |
atccatacataaaaaacttgcaacacaatccaaaatacatcaacctgcaaaattaagaaggtaatgatggcaaagctaaaccaaaactaaagctgcccct |
31089348 |
T |
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| Q |
319 |
ttagcatgctaaaccatgactacttaaataataa--nnnnnnnnnnnnnaacgtttagatgatgaagtttcttctgttgtaactttcctttagatgtttg |
416 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31089349 |
ttagcatgctaaaccatgactacttaaataataatgtgtgtgtgtgtgtaacgtttagatgatgaagtttcttctgttgtaactttcctttagatgtttg |
31089448 |
T |
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| Q |
417 |
actttctgttcagctgtttggtataccaaaagaaatcccacatcgaatatgtgtaaaaaacagacattgagatttgcttataaaataacagtatatatca |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31089449 |
actttctgttcagctgtttggtataccaaaagaaatcccacatcgaatatgtgtaaaaaacagacattgagatttgcttataaaataacagtatatatca |
31089548 |
T |
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| Q |
517 |
ttttcaagcatatt |
530 |
Q |
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| T |
31089549 |
tttacaagcatatt |
31089562 |
T |
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