View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13707_low_4 (Length: 460)
Name: NF13707_low_4
Description: NF13707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13707_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Original strand, 24720717 - 24721147
Alignment:
| Q |
18 |
atatctgtctgcatttccaaccgagttttttgatcgaattgaaaatcttgaatatgcatgggctccatattacaccattcacaaggtataagtaaaacta |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24720717 |
atatctgtctgcatttccaaccgagttttttgatcgaattgaaaatcttgaatatgcatgggctccatattacaccattcacaaggtataagtaaaacta |
24720816 |
T |
|
| Q |
118 |
gattttgattatgcaagtacttttggccttaatgttgtccgatctcagttattcgactttgacagatcttggctggccttttggatcaatatacaatagc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24720817 |
gattttgattatgcaagtacttttggccttaatgttgtccgatctcagttattcgactttgacagatcttggctggccttttggatcaatatacaatagc |
24720916 |
T |
|
| Q |
218 |
tggaaaccctcaaggtctgaaaatggttacatggatggtcgattacttttacaacagagtgatgaatgtaatacaaaagttcactgtaaatagacactat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24720917 |
tggaaaccctcaaggtctgaaaatggttacatggatggtcgattacttttacaacagagtgatgaatgtaatacaaaagttcactgtaaatagacactat |
24721016 |
T |
|
| Q |
318 |
caatccctgaatgaggaagctggaggaatgaatgatctcctttacagattatatagcttaacggtaggttaactagttcatgtagtttcttcaactctat |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24721017 |
caatccctgaatgaggaagctggaggaatgaatgatctcctttacagattatatagcttaacggtaggttaactagttcatgtagtttcttcagctctat |
24721116 |
T |
|
| Q |
418 |
tgttgattcatgtgttcatataatattcttg |
448 |
Q |
| |
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||||||||||||||||||||| ||||||||| |
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| T |
24721117 |
tgttgattcatgtgttcatatgatattcttg |
24721147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 421
Target Start/End: Original strand, 24729390 - 24729793
Alignment:
| Q |
18 |
atatctgtctgcatttccaaccgagttttttgatcgaattgaaaatcttgaatatgcatgggctccatattacaccattcacaaggtataagtaaaacta |
117 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||| | ||| |||| |||||||||||||||| ||||| ||||||||||||||||||| ||||||| |
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|
| T |
24729390 |
atatctgtctgcttttccaaccgagctttttgatcgagtagaagctcttcaatatgcatgggctccttattataccattcacaaggtataagcaaaacta |
24729489 |
T |
|
| Q |
118 |
gattttgattatgcaagtacttttggccttaatgttgtccgatctcagttattcgactttgacagatcttggctggccttttggatcaatatacaatagc |
217 |
Q |
| |
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|||| |||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| | |
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| T |
24729490 |
tgttttcattatgcaagtatttttggccttaatgttatccgatctcagttattcgattttgacagatcttggctggcctgttggatcaatatacaattgg |
24729589 |
T |
|
| Q |
218 |
tggaaaccctcaaggtctgaaaatggttacatggatggtcgattacttttacaacagagtgatgaatgtaatacaaaagttcactgtaaatagacactat |
317 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| ||| ||||||||||| |||| ||| |
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|
| T |
24729590 |
tggaaaccctcaagctctgaaaatggttacgtggatggttgattacttttacaacagagtcatgaatgtaatacagaagctcactgtaaatggacattat |
24729689 |
T |
|
| Q |
318 |
caatccctgaatgaggaagctggaggaatgaatgatctcctttacagattatatagcttaacggtaggttaactagttcatgtagtttcttcaactctat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| | ||| |
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| T |
24729690 |
caatccctgaatgaggaagctggaggaatgaatgatgtcctttacagattatatagcataacggtaggttaactagttcacgtagtttcttcaaatttat |
24729789 |
T |
|
| Q |
418 |
tgtt |
421 |
Q |
| |
|
|||| |
|
|
| T |
24729790 |
tgtt |
24729793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 24689810 - 24690191
Alignment:
| Q |
18 |
atatctgtctgcatttccaaccgagttttttgatcgaattgaaaatcttgaatatgcatgggctccatattacaccattcacaaggtataagtaaaacta |
117 |
Q |
| |
|
|||||| ||||||||||| | |||||||||||||| |||||||| || || || |||||||| |||||||||||||||||||||||| |||||| |
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|
| T |
24689810 |
atatctctctgcatttccgccagagttttttgatcggtttgaaaatattcaacctgtttgggctccctattacaccattcacaaggtataaccaaaactg |
24689909 |
T |
|
| Q |
118 |
gattttgattatgcaagtacttttggccttaatgttgtccgatctcagttattcgactttgacagatcttggctggccttttggatcaatatacaatagc |
217 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | ||| ||||||| |||||| |||||||||||| ||||| ||||| |||||||| ||||| |||| |
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|
| T |
24689910 |
gattttgattatgcaagtgcttttggccttattactgtgtgatctcaattattcaactttgacagattttggccggcctgttggatcagtatactgtagc |
24690009 |
T |
|
| Q |
218 |
tggaaaccctcaaggtctgaaaatggttacatggatggtcgattacttttacaacagagtgatgaatgtaatacaaaagttcactgtaaatagacactat |
317 |
Q |
| |
|
|||||||||||||| ||| |||||||| |||||||||||||||||||||||| || ||||| ||||||| ||| |||| ||||||||| ||||||||| |
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| T |
24690010 |
tggaaaccctcaagctctaaaaatggtgacatggatggtcgattacttttacgaccgagtggtgaatgttatatcgaagtacactgtaaacagacactat |
24690109 |
T |
|
| Q |
318 |
caatccctgaatgaggaagctggaggaatgaatgatctcctttacagattatatagcttaacggtaggttaactagttcatg |
399 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||| ||||||||| |||||| ||| ||||||||||||| |||||||||| |
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| T |
24690110 |
caatcactgaatgaggaaactggaggaatgaatgatgtcctttacaaattatacagcgtaacggtaggttagctagttcatg |
24690191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 24746957 - 24747055
Alignment:
| Q |
18 |
atatctgtctgcatttccaaccgagttttttgatcgaattgaaaatcttgaatatgcatgggctccatattacaccattcacaaggtataagtaaaact |
116 |
Q |
| |
|
|||| ||| ||| ||||||||||| |||||| ||||||||||| |||| |||| ||||||||||| ||||| ||||||||||||||||||| |||||| |
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| T |
24746957 |
atatatgtatgcgtttccaaccgaattttttaatcgaattgaagctcttcaatacgcatgggctccttattataccattcacaaggtataagcaaaact |
24747055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 361 - 410
Target Start/End: Original strand, 24740969 - 24741018
Alignment:
| Q |
361 |
acagattatatagcttaacggtaggttaactagttcatgtagtttcttca |
410 |
Q |
| |
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||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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|
| T |
24740969 |
acagattatatagcttaacggtaggctaactagttactgtagtttcttca |
24741018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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