View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13707_low_5 (Length: 438)
Name: NF13707_low_5
Description: NF13707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13707_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 16 - 423
Target Start/End: Original strand, 23322600 - 23323007
Alignment:
| Q |
16 |
cagagaggacaatttgaatggaattgaaaccatttgtcaatgcacgaaacatgaaaactatgtgtacaaattggaagatgttttacccattccccttctt |
115 |
Q |
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| T |
23322600 |
cagagaggacaatttgaatgggattgaaaccatttgtcaatgcacgaaacatgaaaactatgtgtacaaattggaagatgttttacccattccccttctt |
23322699 |
T |
|
| Q |
116 |
caaactctcctagacaaatagcacagtccacatcacttagtttttgttcaacctcatttttcttaaactgaaacatgggaagtgcttgtaccatagagta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23322700 |
caaactctcctagacaaatagcacagtccacatcacttagtttttgttcaacctcatttttcttaaactgaaacatgggaagtgcttgtaccatagagta |
23322799 |
T |
|
| Q |
216 |
ctccaatccactgtttagaacatgtcgagaagaattgctaggatagaaattcgccagttctggaagtcgtctttgaaaatttgacacatctggaatttgc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23322800 |
ctccaatccactgtttagaacatgtcgagaagaattactaggataaaaattcgccagttctggaagtcgtctttgaaaatttgacacatctggaatttgc |
23322899 |
T |
|
| Q |
316 |
ctttgcacatggtttcttgtggcgattgcatggtaaattnnnnnnnncagacgcataaatgcgccatgggagatagatataaagaagaaaacccacacta |
415 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23322900 |
ctttgaacatggtttcttgtggcgattgcatggtaaattaaaaaaaacagacgcataaatgcgccatgggagatagatataaagaagaaaacccacacta |
23322999 |
T |
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| Q |
416 |
caataatt |
423 |
Q |
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|||||||| |
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| T |
23323000 |
caataatt |
23323007 |
T |
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Back To:
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Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 29 - 140
Target Start/End: Original strand, 41158327 - 41158438
Alignment:
| Q |
29 |
ttgaatggaattgaaaccatttgtcaatgcacgaaacatgaaaactatgtgtacaaattggaagatgttttacccattccccttcttcaaactctcctag |
128 |
Q |
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||||||| ||||||||||| || |||||||| |||||||| |||| ||| ||||| | |||||| |||||| | |||||||| ||||||| ||||| | |
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| T |
41158327 |
ttgaatgcaattgaaaccacttatcaatgcatgaaacatggaaaccatggttacaattaggaagaagttttagcaattcccctccttcaaattctcccaa |
41158426 |
T |
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| Q |
129 |
acaaatagcaca |
140 |
Q |
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|||||||||||| |
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| T |
41158427 |
acaaatagcaca |
41158438 |
T |
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