View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13707_low_6 (Length: 321)

Name: NF13707_low_6
Description: NF13707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13707_low_6
NF13707_low_6
[»] chr5 (4 HSPs)
chr5 (80-305)||(36734452-36734677)
chr5 (101-305)||(24850500-24850702)
chr5 (83-245)||(16107142-16107305)
chr5 (204-253)||(26645502-26645552)
[»] chr6 (8 HSPs)
chr6 (80-305)||(20114091-20114306)
chr6 (83-297)||(21737995-21738207)
chr6 (218-304)||(24003474-24003562)
chr6 (236-304)||(22546040-22546107)
chr6 (204-284)||(14798434-14798513)
chr6 (217-303)||(23088830-23088917)
chr6 (204-245)||(14798752-14798794)
chr6 (81-126)||(14798311-14798356)
[»] chr8 (3 HSPs)
chr8 (117-300)||(9416273-9416456)
chr8 (228-305)||(29614562-29614638)
chr8 (204-271)||(35055301-35055368)
[»] scaffold0126 (2 HSPs)
scaffold0126 (93-238)||(32905-33051)
scaffold0126 (260-305)||(32855-32901)
[»] chr7 (5 HSPs)
chr7 (223-305)||(13551954-13552035)
chr7 (80-305)||(17149081-17149303)
chr7 (83-297)||(16176425-16176639)
chr7 (223-305)||(17913269-17913350)
chr7 (232-279)||(6459983-6460029)
[»] scaffold0086 (1 HSPs)
scaffold0086 (198-305)||(9629-9736)
[»] scaffold0613 (1 HSPs)
scaffold0613 (83-301)||(2261-2478)
[»] chr4 (4 HSPs)
chr4 (227-305)||(10112175-10112252)
chr4 (83-158)||(9252690-9252765)
chr4 (223-296)||(17379889-17379959)
chr4 (84-155)||(9199108-9199179)
[»] scaffold0115 (1 HSPs)
scaffold0115 (201-305)||(36731-36835)
[»] scaffold2087 (1 HSPs)
scaffold2087 (223-297)||(742-814)
[»] scaffold0211 (1 HSPs)
scaffold0211 (223-296)||(22026-22097)
[»] chr3 (1 HSPs)
chr3 (201-296)||(14305270-14305365)
[»] scaffold0039 (1 HSPs)
scaffold0039 (223-271)||(105858-105905)


Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 80 - 305
Target Start/End: Original strand, 36734452 - 36734677
Alignment:
Q  80 catttttcatcaatttaagttaaaacttcaaaataaacatttcaacataatttaacaatgagatttaagtacccacaacatgtttctaacatatttcaca 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36734452 catttttcatcaatttaagttaaaacttcaaaataaacatttcaacataatttaacaatgagatttaagtacccacaacatgtttctaacatatttcaca 36734551  T
Q  180 tattcaaaatcgtcacttaactaggagcacgaaaatcacatttaaaatcatcaaaatcataattcacacaaaagcaattaatgacccataagtagaaaaa 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36734552 tattcaaaatcgtcacttaactaggagcacgaaaatcacatttaaaatcatcaaaatcataattcacacaaaagcaattaatgacccataagtagaaaaa 36734651  T
Q  280 tgagattatagcttatttgatgaaat 305  Q
    ||||||||||||||||||||||||||    
T  36734652 tgagattatagcttatttgatgaaat 36734677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 101 - 305
Target Start/End: Complemental strand, 24850702 - 24850500
Alignment:
Q  101 aaaacttcaaaataaacatttcaacataatttaacaatgagatttaagtacccacaacatgtttctaacatatttcacatattcaaaatcgtcacttaac 200  Q
    ||||||||||| ||| || |||||||||||| | |||||| ||||||| ||||| |||| ||||  |||| |||||||||| |||||||| |||||||||    
T  24850702 aaaacttcaaa-taatcacttcaacataattaagcaatgaaatttaagcacccataacaagttttcaacaaatttcacatactcaaaatcatcacttaac 24850604  T
Q  201 taggagcacgaaaatc-acatttaaaatcatcaaaatcataattcacacaaaagcaattaatgacccataagtagaaaaatgagattatagcttatttga 299  Q
    |||||||||||||||| ||||| ||||||||||||||||||| |||  ||||||  |||  |||||||||| | ||||||  ||||||||||||||||||    
T  24850603 taggagcacgaaaatcaacattcaaaatcatcaaaatcataaatcattcaaaagtgatt-gtgacccataa-ttgaaaaagaagattatagcttatttga 24850506  T
Q  300 tgaaat 305  Q
    ||||||    
T  24850505 tgaaat 24850500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 245
Target Start/End: Original strand, 16107142 - 16107305
Alignment:
Q  83 ttttcatcaatttaagttaaaacttcaaaataaacatttcaacataatttaacaatgagatttaagtacccacaacatgtttctaacatatttcacatat 182  Q
    ||||||||| | ||||||||||  ||||| | | |||||||||||| || ||| |||| ||||||||| |||||||| |  |  |||| |||||||| |     
T  16107142 ttttcatcattctaagttaaaaactcaaagttatcatttcaacatagttaaaccatgaaatttaagtaaccacaacaagaattcaacaaatttcacacac 16107241  T
Q  183 tcaaaatcgtcacttaactaggagcacgaaaatc-acatttaaaatcatcaaaatcataattca 245  Q
    ||||| |  |||| |||  | ||||||||||||| ||||| |||||||| |||| |||||||||    
T  16107242 tcaaacttatcacataatcatgagcacgaaaatcaacattcaaaatcataaaaagcataattca 16107305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 253
Target Start/End: Complemental strand, 26645552 - 26645502
Alignment:
Q  204 gagcacgaaaatca-catttaaaatcatcaaaatcataattcacacaaaag 253  Q
    |||||| ||||||| |||||||||||||||||||||||||||| |||||||    
T  26645552 gagcactaaaatcaacatttaaaatcatcaaaatcataattcatacaaaag 26645502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 80 - 305
Target Start/End: Original strand, 20114091 - 20114306
Alignment:
Q  80 catttttcatcaatttaagttaaaacttcaaaataaacatttcaacataatttaacaatgagatttaagtacccacaacatgtttctaacatatttcaca 179  Q
    |||||||||||||||||||  ||||||| ||||||| | ||||||||||||| ||||||||||||||||||||||||||| |||||||| | ||||||||    
T  20114091 catttttcatcaatttaagccaaaactttaaaataaccttttcaacataattcaacaatgagatttaagtacccacaacaagtttctaataaatttcaca 20114190  T
Q  180 tattcaaaatcgtcacttaactaggagcacgaaaatcacatttaaaatcatcaaaatcataattcacacaaaagcaattaatgacccataagtagaaaaa 279  Q
    ||||||||||| |||||||||||||||||| ||||||| ||         ||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  20114191 tattcaaaatcatcacttaactaggagcacaaaaatcatat---------tcaaaatcataattcacacaaaagcaatt-atgacacataagtagaaaaa 20114280  T
Q  280 tgagattatagcttatttgatgaaat 305  Q
      | ||||||||||||||||||||||    
T  20114281 gaatattatagcttatttgatgaaat 20114306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 297
Target Start/End: Complemental strand, 21738207 - 21737995
Alignment:
Q  83 ttttcatcaatttaagttaaaacttcaaaataaacatttcaacataatttaacaatgagatttaagtacccacaacatgtttctaacatatttcacatat 182  Q
    ||||||||||||||||| ||||||||||| ||| || ||||||| |  | ||||||||   ||||| ||| |||| | |||| ||||| ||||||||||     
T  21738207 ttttcatcaatttaagtcaaaacttcaaagtaatcacttcaacaaatatcaacaatgaagattaagcaccaacaataagtttataacaaatttcacatac 21738108  T
Q  183 tcaaaatcgtcacttaactaggagcacgaaaa-tcacatttaaaatcatcaaaatcataattcacacaaaagcaattaatgacccataagtagaaaaatg 281  Q
    |||||| | |||||||| || |||||| |||| | |||| ||||||||||||||||||||||||  ||||| ||||| ||||| ||||||| ||||||      
T  21738107 tcaaaaccatcacttaattatgagcacaaaaattaacatctaaaatcatcaaaatcataattcattcaaaa-caatt-atgacgcataagt-gaaaaaga 21738011  T
Q  282 agattatagcttattt 297  Q
    | ||||||||||||||    
T  21738010 aaattatagcttattt 21737995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 218 - 304
Target Start/End: Original strand, 24003474 - 24003562
Alignment:
Q  218 catttaaaatcatcaaaatcataattcacacaaaagcaattaatgacccataagt---agaaaaatgagattatagcttatttgatgaaa 304  Q
    |||||||||||||||||||||||||||||||||||||| || |||| ||| ||||   | |||||||||||||||| |||||||||||||    
T  24003474 catttaaaatcatcaaaatcataattcacacaaaagcactt-atgatccaaaagtaaaaaaaaaatgagattatagtttatttgatgaaa 24003562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 304
Target Start/End: Original strand, 22546040 - 22546107
Alignment:
Q  236 tcataattcacacaaaagcaattaatgacccataagtagaaaaatgagattatagcttatttgatgaaa 304  Q
    |||||||||||||||||||| ||| ||||| | ||||| ||| ||||||||||||||||||||||||||    
T  22546040 tcataattcacacaaaagcactta-tgaccgaaaagtaaaaagatgagattatagcttatttgatgaaa 22546107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 284
Target Start/End: Original strand, 14798434 - 14798513
Alignment:
Q  204 gagcacgaaaatca-catttaaaatcatcaaaatcataattcacacaaaagcaattaatgacccataagtagaaaaatgaga 284  Q
    |||||||||||||| ||||||||||||||||||||||||||||  ||||||  ||| |||||||| |||| |||||||||||    
T  14798434 gagcacgaaaatcaacatttaaaatcatcaaaatcataattcattcaaaagagatt-atgacccaaaagt-gaaaaatgaga 14798513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 303
Target Start/End: Complemental strand, 23088917 - 23088830
Alignment:
Q  217 acatttaaaatcatcaaaatcataattcacacaaaagcaattaatgacccataagt--agaaaaatgagattatagcttatttgatgaa 303  Q
    ||||||||| ||||||||||||||||||||| ||||||  || ||||||||||| |  | |||||||||||||| ||||| ||||||||    
T  23088917 acatttaaattcatcaaaatcataattcacataaaagcgctt-atgacccataattaaaaaaaaatgagattatggcttaattgatgaa 23088830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 14798752 - 14798794
Alignment:
Q  204 gagcacgaaaatca-catttaaaatcatcaaaatcataattca 245  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  14798752 gagcacgaaaatcaacatttaaaatcatcaaaatcataattca 14798794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 126
Target Start/End: Original strand, 14798311 - 14798356
Alignment:
Q  81 atttttcatcaatttaagttaaaacttcaaaataaacatttcaaca 126  Q
    ||||||||||||||||||| |||||||||| |||| ||||| ||||    
T  14798311 atttttcatcaatttaagtgaaaacttcaacataatcattttaaca 14798356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 117 - 300
Target Start/End: Original strand, 9416273 - 9416456
Alignment:
Q  117 catttcaacataatttaacaatgagatttaagtacccacaacatgtttctaacatatttcacatattcaaaatcgtcacttaactaggagcacgaaaatc 216  Q
    ||||||||||||||| ||| |||  ||||||||||| || ||| |||||||||  ||||||||||||||||||| ||||||||||| ||||| |||||||    
T  9416273 catttcaacataattaaaccatgcaatttaagtacctacgacaagtttctaacgaatttcacatattcaaaatcatcacttaactaagagcatgaaaatc 9416372  T
Q  217 -acatttaaaatcatcaaaatcataattcacacaaaagcaattaatgacccataagtagaaaaatgagattatagcttatttgat 300  Q
     |||||   |||||| |||||||||||||||||||||||| || ||  | ||||||||||||||  |||| ||||||||||||||    
T  9416373 aacattcggaatcatgaaaatcataattcacacaaaagcactt-atagcgcataagtagaaaaagaagatcatagcttatttgat 9416456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 305
Target Start/End: Complemental strand, 29614638 - 29614562
Alignment:
Q  228 catcaaaatcataattcacacaaaagcaattaatgacccataagtagaaaaatgagattatagcttatttgatgaaat 305  Q
    ||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||  ||| ||||||||| ||||||    
T  29614638 catcaaaatcataattcacacgaaagcactta-tgacccataagtagaaaaatgagggtatggcttatttgttgaaat 29614562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 271
Target Start/End: Original strand, 35055301 - 35055368
Alignment:
Q  204 gagcacgaaaatca-catttaaaatcatcaaaatcataattcacacaaaagcaattaatgacccataag 271  Q
    |||||| ||||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||||||    
T  35055301 gagcaccaaaatcaacatttaaaatcatcaaaatcataatttacacaaaagcactt-atgacccataag 35055368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 93 - 238
Target Start/End: Complemental strand, 33051 - 32905
Alignment:
Q  93 tttaagttaaaacttcaaaataaacatttcaacataatttaacaatgagatttaagtacccacaacatgtttctaacatatttcacatattcaaaatcgt 192  Q
    |||||| |||||| |||| |||| ||||||||||||| | |||||||| |||||||||||||||||| |||||| |||  |||||||||||||||||| |    
T  33051 tttaagctaaaacatcaacataatcatttcaacataaataaacaatgaaatttaagtacccacaacaagtttcttacaactttcacatattcaaaatcat 32952  T
Q  193 cacttaactaggagcacgaaaatc-acatttaaaatcatcaaaatca 238  Q
     |||||| ||||||||| |||||| ||||| |||||||  |||||||    
T  32951 gacttaattaggagcacaaaaatcaacattcaaaatcacaaaaatca 32905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 32901 - 32855
Alignment:
Q  260 atgacccataagtagaaaaatga-gattatagcttatttgatgaaat 305  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  32901 atgacccataagtagaaaaatgaagattatagcttatttgatgaaat 32855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 223 - 305
Target Start/End: Original strand, 13551954 - 13552035
Alignment:
Q  223 aaaatcatcaaaatcataattcacacaaaagcaattaatgacccataagtagaaaaatgagattatagcttatttgatgaaat 305  Q
    |||||||| |||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||| | ||||||    
T  13551954 aaaatcattaaaatcataattcacacaaaagcactta-tgaccaataagtagaaaaatgagattatagcttattagttgaaat 13552035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 305
Target Start/End: Complemental strand, 17149303 - 17149081
Alignment:
Q  80 catttttcatcaatttaagttaaaacttcaaaataaacatttcaacataatttaacaatgagatttaagtacccacaacatgtttctaacatatttcaca 179  Q
    |||||||||||||||||||  ||| ||||||| | | ||||| |||||| || ||| |||| ||||| |||| ||||| |  |||| |||| ||||||||    
T  17149303 catttttcatcaatttaagccaaatcttcaaagttatcatttaaacatagttaaaccatgaaatttacgtactcacaaga--tttc-aacaaatttcaca 17149207  T
Q  180 tattcaaaatcgtcacttaactaggagcacgaaaatc-acatttaaaatcatcaaaatcataattcacacaaaagcaattaatgacccataagtagaaaa 278  Q
    |||||||| |  |||| |||  | |||||| |||||| ||||  |||||||||||||||||||||||  ||||||| ||| |||||||| |||| |||||    
T  17149206 tattcaaatttatcacataatcatgagcacaaaaatcaacatgcaaaatcatcaaaatcataattcattcaaaagcgatt-atgacccaaaagt-gaaaa 17149109  T
Q  279 atgag-attatagcttatttgatgaaat 305  Q
    |  || ||||||||||||||||||||||    
T  17149108 agaagaattatagcttatttgatgaaat 17149081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 83 - 297
Target Start/End: Original strand, 16176425 - 16176639
Alignment:
Q  83 ttttcatcaatttaagttaaaacttcaaaataaacatttcaacataatttaacaatgagatttaagtacccacaacatgtttctaacatatttcacatat 182  Q
    |||||| ||||||||| ||| |||||||| | | |||||||||||| || ||| |||| |||||||||||||||||| | ||  |||| ||||||||||     
T  16176425 ttttcaacaatttaaggtaacacttcaaagttatcatttcaacatagttaaaccatgaaatttaagtacccacaacaagatttcaacaaatttcacatac 16176524  T
Q  183 tcaaaatcgtcacttaactaggagcacg-aaaatcacatttaaaatcatcaaaatcataattcacacaaaagcaattaatgacccataagtagaaaaatg 281  Q
    ||||| |  |||| |||  | || |||| ||||||||||| ||||| || ||| ||||||||||  ||||||  ||| |||||| | || ||||||||      
T  16176525 tcaaatttatcacataatcatgaacacgaaaaatcacattcaaaattattaaattcataattcattcaaaagtgatt-atgaccaaaaaatagaaaaagt 16176623  T
Q  282 agattatagcttattt 297  Q
    ||||||||||||||||    
T  16176624 agattatagcttattt 16176639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 223 - 305
Target Start/End: Original strand, 17913269 - 17913350
Alignment:
Q  223 aaaatcatcaaaatcataattcacacaaaagcaattaatgacccataagtagaaaaatgagattatagcttatttgatgaaat 305  Q
    |||||||| ||| ||||| ||||  |||||| ||||| ||||||||||| |||||||  ||||||||||||||||||||||||    
T  17913269 aaaatcattaaattcatagttcattcaaaagtaatta-tgacccataagcagaaaaagaagattatagcttatttgatgaaat 17913350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 6460029 - 6459983
Alignment:
Q  232 aaaatcataattcacacaaaagcaattaatgacccataagtagaaaaa 279  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||||||    
T  6460029 aaaatcataattcacacgaaagcactta-tgacccataagtagaaaaa 6459983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 305
Target Start/End: Complemental strand, 9736 - 9629
Alignment:
Q  198 aactaggagcacgaaaatca-catttaaaatcatcaaaatcataattcacacaaaagcaattaatgacccataagtagaaaaatgagattatagcttatt 296  Q
    ||||||||||||| |||||| |||  |||||||| |||||| ||||||| ||||||||| ||| |||||||||| ||||||||  |||||||||||||||    
T  9736 aactaggagcacggaaatcaacatacaaaatcataaaaatcttaattcatacaaaagcactta-tgacccataaatagaaaaagaagattatagcttatt 9638  T
Q  297 tgatgaaat 305  Q
    |||||||||    
T  9637 tgatgaaat 9629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0613 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 83 - 301
Target Start/End: Complemental strand, 2478 - 2261
Alignment:
Q  83 ttttcatcaatttaagttaaaacttcaaaataaacatttcaacataatttaacaatgagatttaagtacccacaacatgtttctaacatatttcacatat 182  Q
    |||||| || ||||||  ||| ||| ||| ||| ||||||||||||||| | |||| | ||| || ||||||||||| ||||| |||| | ||||||||     
T  2478 ttttcaacattttaaggcaaagcttaaaagtaatcatttcaacataattaagcaatcaaattgaaatacccacaacaagtttccaaca-aattcacatac 2380  T
Q  183 tc-aaaatcgtcacttaactaggagcacgaaaatc-acatttaaaatcatcaaaatcataattcacacaaaagcaattaatgacccataagtagaaaaat 280  Q
    || |||||| ||||||||||| ||||| || |||| ||||| ||||||||||||||||||||| |  | ||||  ||| |||||| |||| | ||||||     
T  2379 tcaaaaatcatcacttaactatgagcatgacaatcaacattcaaaatcatcaaaatcataattaattcgaaagtgatt-atgaccaataa-ttgaaaaag 2282  T
Q  281 gagattatagcttatttgatg 301  Q
     ||||||||||||||||||||    
T  2281 aagattatagcttatttgatg 2261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 305
Target Start/End: Complemental strand, 10112252 - 10112175
Alignment:
Q  227 tcatcaaaatcataattcacacaaaagcaattaatgacccataagtagaaaaatgagattatagcttatttgatgaaat 305  Q
    |||| ||||||| ||||||||||||| || |||  |||||||  |||||||||||||||||||||||||||||||||||    
T  10112252 tcataaaaatcaaaattcacacaaaaacacttag-gacccattcgtagaaaaatgagattatagcttatttgatgaaat 10112175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 158
Target Start/End: Original strand, 9252690 - 9252765
Alignment:
Q  83 ttttcatcaatttaagttaaaacttcaaaataaacatttcaacataatttaacaatgagatttaagtacccacaac 158  Q
    ||||||| |||||||||||||||||||||   | |||||||||||| ||  ||||||| |||||||||||||||||    
T  9252690 ttttcataaatttaagttaaaacttcaaagctatcatttcaacatagttatacaatgaaatttaagtacccacaac 9252765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 296
Target Start/End: Original strand, 17379889 - 17379959
Alignment:
Q  223 aaaatcatcaaaatcataattcacacaaaagcaattaatgacccataagtagaaaaatgagattatagcttatt 296  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||||| ||||| | |||||||||||||||    
T  17379889 aaaatcatcaaaatcataattcattcaaaagcaatt-atgacccataagt-gaaaact-agattatagcttatt 17379959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 155
Target Start/End: Original strand, 9199108 - 9199179
Alignment:
Q  84 tttcatcaatttaagttaaaacttcaaaataaacatttcaacataatttaacaatgagatttaagtacccac 155  Q
    ||||||||||||||||||||||||||||   | |||||||||||| ||  || |||| ||||||||||||||    
T  9199108 tttcatcaatttaagttaaaacttcaaagctatcatttcaacatagttataccatgaaatttaagtacccac 9199179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 201 - 305
Target Start/End: Complemental strand, 36835 - 36731
Alignment:
Q  201 taggagcacgaaaatca-catttaaaatcatcaaaatcataattcacacaaaagcaattaatgacccataagtagaaaaatgagattatagcttatttga 299  Q
    ||||||||||||| ||| |||  |||||||  ||| || ||||||||||||||||| ||| ||||||| ||||| ||| ||||||||||||| |||||||    
T  36835 taggagcacgaaattcaacatcaaaaatcacaaaattcgtaattcacacaaaagcactta-tgacccaaaagtaaaaagatgagattatagcatatttga 36737  T
Q  300 tgaaat 305  Q
    ||||||    
T  36736 tgaaat 36731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2087 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold2087
Description:

Target: scaffold2087; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 223 - 297
Target Start/End: Complemental strand, 814 - 742
Alignment:
Q  223 aaaatcatcaaaatcataattcacacaaaagcaattaatgacccataagtagaaaaatgagattatagcttattt 297  Q
    |||||||||||||||||||||||  ||||| ||||| ||||||||||||| ||||||| | ||||||||||||||    
T  814 aaaatcatcaaaatcataattcattcaaaaacaatt-atgacccataagt-gaaaaattatattatagcttattt 742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 296
Target Start/End: Original strand, 22026 - 22097
Alignment:
Q  223 aaaatcatcaaaatcataattcacacaaaagcaattaatgacccataagtagaaaaatgagattatagcttatt 296  Q
    |||||||||||| ||||||||||  ||||||||||| |||||||||||||| ||||| || |||||||||||||    
T  22026 aaaatcatcaaattcataattcattcaaaagcaatt-atgacccataagtataaaaa-gaaattatagcttatt 22097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 201 - 296
Target Start/End: Complemental strand, 14305365 - 14305270
Alignment:
Q  201 taggagcacgaaaatca-catttaaaatcatcaaaatcataattcacacaaaagcaattaatgacccataagtagaaaaatgagattatagcttatt 296  Q
    ||||||| ||||||||| |||  |||||||| |||||||||||||||||||||||| || ||||  ||||||||||||||  |  ||||||||||||    
T  14305365 taggagcccgaaaatcaacatcaaaaatcataaaaatcataattcacacaaaagcactt-atgatgcataagtagaaaaagaaacttatagcttatt 14305270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 105905 - 105858
Alignment:
Q  223 aaaatcatcaaaatcataattcacacaaaagcaattaatgacccataag 271  Q
    |||||||| |||||||||||||||||||||||| || ||||||||||||    
T  105905 aaaatcatgaaaatcataattcacacaaaagcactt-atgacccataag 105858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University