View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13707_low_8 (Length: 308)
Name: NF13707_low_8
Description: NF13707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13707_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 4e-72; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 121 - 279
Target Start/End: Complemental strand, 49987073 - 49986913
Alignment:
| Q |
121 |
tggtggtgactttcactt--gcattcataaacacttgacccccatttaatgcaaaaaagctcagcatgacggggagatggagtaaaaagctctttaaaaa |
218 |
Q |
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| T |
49987073 |
tggtggtgactttcatttttgcattcataaacacttgacccccatttaatgcaaaaaagcttagcatgacggggagatggagtaaaaagctctttaaaaa |
49986974 |
T |
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| Q |
219 |
catcagttgcaatagctctaagaatgggaaaatgctttatattcagcacttaattaataaa |
279 |
Q |
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| T |
49986973 |
catcagttgcaatagctctaagaatgggaaaatgctttatattcagcaattaattaataaa |
49986913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 49987139 - 49987076
Alignment:
| Q |
20 |
tatagtgtgtgtaattgtttgttgtaagtgtttctgccaaaagacagtttctactactaaaatg |
83 |
Q |
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| T |
49987139 |
tatagtgtgtgtaattgtttgttgtaagtgtttctgccaaaagacagtttctactgctaaaatg |
49987076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 16772732 - 16772640
Alignment:
| Q |
20 |
tatagtgtgtgtaattgtttgttgtaagtgtttctgcc------aaaagacagtttctactactaaaatgtattttggtaccagtttctaaca |
106 |
Q |
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| T |
16772732 |
tataatgtgtgtaattgtttgttgtaagcgtttctgccgtcaataaaagacagttcatattattaaaatgtattttggtaccaatttctaaca |
16772640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 54886767 - 54886719
Alignment:
| Q |
58 |
aaaagacagtttctactactaaaatgtattttggtaccagtttctaaca |
106 |
Q |
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| T |
54886767 |
aaaagacagtttctaccattaaaatgtattttggtaccagtttctaaca |
54886719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 107 - 272
Target Start/End: Original strand, 42302779 - 42302940
Alignment:
| Q |
107 |
caagatttctaagttggtggtgactttcacttgcattcataaacacttgacccccatttaatgcaaaaaagctcagcatgacggggagatggagtaaaaa |
206 |
Q |
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| T |
42302779 |
caagctttctaagttgatggtgacttccgcttgcattcataaacacttcaaccccatttaatgcaa----gctcagcatgagggggagatggagtaaaaa |
42302874 |
T |
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| Q |
207 |
gctctttaaaaacatcagttgcaatagctctaagaatgggaaaatgctttatattcagcacttaat |
272 |
Q |
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| T |
42302875 |
gttcttcacaaacttccactgcaatagctctaagaatgggaaaatgctttatgttaagcacataat |
42302940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 38198595 - 38198501
Alignment:
| Q |
20 |
tatagtgtgtgtaattgtttgttgtaagtgtttctgcca------aaagacagtttctactactaaaatgtattttggtaccagtttctaacaca |
108 |
Q |
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| T |
38198595 |
tatagtgtgtgtagttgtttgttgtaagcgtttcggccatcaataaaagacagtttctactattaaaatgtattttggtaccagtttctaacaca |
38198501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 42599616 - 42599559
Alignment:
| Q |
58 |
aaaagacagtttctactactaaaatgtattttggtaccagtttctaacacaagatttc |
115 |
Q |
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| T |
42599616 |
aaaagtcaatttctactattaaaatatattttggtactagtttctaacacaatatttc |
42599559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 20936769 - 20936808
Alignment:
| Q |
67 |
tttctactactaaaatgtattttggtaccagtttctaaca |
106 |
Q |
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| T |
20936769 |
tttctactattaaaatgtattttggtacccgtttctaaca |
20936808 |
T |
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