View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13708_high_10 (Length: 312)
Name: NF13708_high_10
Description: NF13708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13708_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 11 - 296
Target Start/End: Original strand, 46785076 - 46785361
Alignment:
| Q |
11 |
taatacttgaatgtgttttggagacaaaccgtgagacgaatttattgaatttaattcagggtcagtttcagaggtgggttctacgtatcaaaccaattac |
110 |
Q |
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| T |
46785076 |
taatgcttgactgtgttttggggacaaaccgtgagacgaatttattgaatttaattcagggtcagtttcagaggtgggttctacgtatcaaaccaattac |
46785175 |
T |
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| Q |
111 |
cctacgttgtgaccacccttttttaaggtatgttttagacttaatatttcacaatcaaaacatatataaatggatatattgtttcctaaactaaattatg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46785176 |
cctacgttgtgaccacccttttttaaggtatgttttagacttaatatttcacaatcaaaacatatataaatggatatattgtttcctaaactaaattatg |
46785275 |
T |
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| Q |
211 |
ttttgattgctataactagattgaaattgtccatgttcgttgagaatataatttacaattttccttaagatattgctctataaact |
296 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46785276 |
ttttgattgctataactagattgatattgtccatgttcgttgagaatataatttacaattttccttaagatattgctctataaact |
46785361 |
T |
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