View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13708_high_6 (Length: 485)
Name: NF13708_high_6
Description: NF13708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13708_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 18 - 470
Target Start/End: Original strand, 15868481 - 15868932
Alignment:
| Q |
18 |
agaagagctcttaatcttggtgtaaatgttaagatgattacaggtaactaaacaaaggactacatttctgttaaaatgacttattaacatttctgcatcg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15868481 |
agaagagctcttaatcttggtgtaaatgttaagatgattacaggtaactaaacaaaggactacatttctgttaaaatgacttattaacatttctgcatcg |
15868580 |
T |
|
| Q |
118 |
gccacatttgactgcgattttctgtaatataaaggatcgcaactgttactggcttaccgcgactgctatttaaaaaacattatcttgacttttatttttc |
217 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15868581 |
gccacatttgactgggattttctgtaatataaaggatcgcaactgttactggcttgccgcgactgctatttaaaaaacattatcttgacttttatttttc |
15868680 |
T |
|
| Q |
218 |
tttctaggtgatcaacttgcaatagctaaggagactggtaggagacttggtatgggaaccaatatgtatccatcttctaccttgttgggtcaagataaag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15868681 |
tttctaggtgatcaacttgcaatagctaaggagactggtaggagacttggtatgggaaccaatatgtatccatcttctaccttgttgggtcaagataaag |
15868780 |
T |
|
| Q |
318 |
atgcaaatgttgctgcacttccagttgaagagctgattgagaaggcagacggatttgccggagtttttccaggttcatattcttttagcaactaactatt |
417 |
Q |
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| T |
15868781 |
atgcaaatgttgctgcacttccagttgaagagctgattgagaaggcagacggatttgccggagtttttccaggttcatattcttttagcaactaactatt |
15868880 |
T |
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| Q |
418 |
ctgnnnnnnntttcctttttgcttatcctaatgctcttcgaaaaggtgtagtt |
470 |
Q |
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| T |
15868881 |
ctg-aaaaaatttcctttttgcttatcctaatgctcttcgaaaaggtgtagtt |
15868932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 223 - 395
Target Start/End: Complemental strand, 53075876 - 53075704
Alignment:
| Q |
223 |
aggtgatcaacttgcaatagctaaggagactggtaggagacttggtatgggaaccaatatgtatccatcttctaccttgttgggtcaagataaagatgca |
322 |
Q |
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||||||||||||||| ||||| ||||||||||| |||||||||| |||||||| ||||||||||||||| | ||||| | |||||||| ||||| ||| |
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| T |
53075876 |
aggtgatcaacttgccatagcaaaggagactggccggagacttgggatgggaactaatatgtatccatctgccaccttacttggtcaagacaaagacgca |
53075777 |
T |
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| Q |
323 |
aatgttgctgcacttccagttgaagagctgattgagaaggcagacggatttgccggagtttttccaggttcat |
395 |
Q |
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| T |
53075776 |
aatattgccgcacttccagttgaagagctgattgagaaggctgatgggtttgctggagtatttccaggttcat |
53075704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 53076031 - 53075988
Alignment:
| Q |
21 |
agagctcttaatcttggtgtaaatgttaagatgattacaggtaa |
64 |
Q |
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| T |
53076031 |
agagctcttcatcttggtgtcaatgttaagatgattactggtaa |
53075988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 220 - 392
Target Start/End: Original strand, 50275840 - 50276012
Alignment:
| Q |
220 |
tctaggtgatcaacttgcaatagctaaggagactggtaggagacttggtatgggaaccaatatgtatccatcttctaccttgttgggtcaagataaagat |
319 |
Q |
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|||||||||||| ||||| || || ||||| ||||| | || ||||| |||||||| || ||||||||||||||| | ||| | |||||| || ||| |
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| T |
50275840 |
tctaggtgatcagcttgccattgccaaggaaactggccgaaggcttggaatgggaacgaacatgtatccatcttcttcattgctcggtcaaagcaaggat |
50275939 |
T |
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| Q |
320 |
gcaaatgttgctgcacttccagttgaagagctgattgagaaggcagacggatttgccggagtttttccaggtt |
392 |
Q |
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| T |
50275940 |
gctgctgtttcagctcttccagttgatgagttgattgagaaggctgatggatttgctggagtgtttcctggtt |
50276012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 50275705 - 50275755
Alignment:
| Q |
14 |
catcagaagagctcttaatcttggtgtaaatgttaagatgattacaggtaa |
64 |
Q |
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||||| ||||||||| || |||||||| ||||||||||||||||| ||||| |
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| T |
50275705 |
catcacaagagctctgaaccttggtgtgaatgttaagatgattactggtaa |
50275755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 245 - 391
Target Start/End: Complemental strand, 1497323 - 1497177
Alignment:
| Q |
245 |
aaggagactggtaggagacttggtatgggaaccaatatgtatccatcttctaccttgttgggtcaagataaagatgcaaatgttgctgcacttccagttg |
344 |
Q |
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||||| |||||||| || ||||| |||||||| || ||||||||||| ||| | ||| | |||||||| |||||| | | || | || |||||||||| |
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| T |
1497323 |
aaggaaactggtagaaggcttggaatgggaacaaacatgtatccatcgtctgctttgcttggtcaagacaaagattcttctatttcggctcttccagttg |
1497224 |
T |
|
| Q |
345 |
aagagctgattgagaaggcagacggatttgccggagtttttccaggt |
391 |
Q |
| |
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| ||| |||| |||||||| || |||||||| ||||| ||||||||| |
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| T |
1497223 |
acgagttgatcgagaaggctgatggatttgcaggagtatttccaggt |
1497177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 1462287 - 1462336
Alignment:
| Q |
342 |
ttgaagagctgattgagaaggcagacggatttgccggagtttttccaggt |
391 |
Q |
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|||| ||| ||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
1462287 |
ttgacgagttgattgagaaggctgacggatttgccggagtatttccaggt |
1462336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 28626629 - 28626672
Alignment:
| Q |
21 |
agagctcttaatcttggtgtaaatgttaagatgattacaggtaa |
64 |
Q |
| |
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||||||||| |||||||||| ||||||||||||||||| ||||| |
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| T |
28626629 |
agagctcttcatcttggtgtcaatgttaagatgattactggtaa |
28626672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 1497479 - 1497433
Alignment:
| Q |
18 |
agaagagctcttaatcttggtgtaaatgttaagatgattacaggtaa |
64 |
Q |
| |
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|||||||| ||||| |||||||| ||||||||||||||||| ||||| |
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|
| T |
1497479 |
agaagagcacttaaccttggtgtgaatgttaagatgattactggtaa |
1497433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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