View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13708_high_8 (Length: 360)
Name: NF13708_high_8
Description: NF13708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13708_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 15 - 347
Target Start/End: Original strand, 31527734 - 31528066
Alignment:
| Q |
15 |
accttctacactgattcaaccacgcttgggagttagaaccatcactgaacttaatgcaaagatttatctactacattgatccattatgtaaataacattg |
114 |
Q |
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| T |
31527734 |
accttctacactgattcaaccacgcttgggagttagaaccatcactgaacttaatgcaaagatttatctactacattgatccattatgtaaataacattg |
31527833 |
T |
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| Q |
115 |
taatttttctactacaaataaatgaattacaaggactcccaaatggatttcatattctttgtactatatacaaatgaagttggaagctctagacatcaaa |
214 |
Q |
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| T |
31527834 |
taatttttctactacaaattaatgaattacaaggactcccaaatggatttcatattctttgtactatatacaaatgaagttggaagctctagacatcaaa |
31527933 |
T |
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| Q |
215 |
tttacaattcctgtgaaattggaacttgggtagaacttccaattccatgtatttagcaatatacttgttggttgcttcacttggatgcacactgtcccaa |
314 |
Q |
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| T |
31527934 |
tttacaattcctgtgaaactggaacttgggtagaacttccaattccatgtatttagcaatatacttgttggttgcttcacttggatgcacactgtcccaa |
31528033 |
T |
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| Q |
315 |
aatacatattttgaagcatcatcacacacaggt |
347 |
Q |
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| T |
31528034 |
aatacatattttgaagcatcatcacacacaggt |
31528066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 152 - 347
Target Start/End: Original strand, 40845400 - 40845599
Alignment:
| Q |
152 |
cccaaatggatttcatattctttgtactatatacaaatgaagttggaagctctagac----atcaaatttacaattcctgtgaaattggaacttgggtag |
247 |
Q |
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| T |
40845400 |
cccaaatggatttcatattctttgtactatatacaaatgaagttggaagctctagacttcaatcaaatttacaattcctatgaaattgaaacttgggtag |
40845499 |
T |
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| Q |
248 |
aacttccaattccatgtatttagcaatatacttgttggttgcttcacttggatgcacactgtcccaaaatacatattttgaagcatcatcacacacaggt |
347 |
Q |
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| T |
40845500 |
aacttccaattctaagtatttagcaatatacttgttggttgcttcacttggatgcacactgtcccaaaatacatatttagaagcgtcatcacatacaggt |
40845599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 117 - 347
Target Start/End: Original strand, 31497083 - 31497316
Alignment:
| Q |
117 |
atttttctactacaaataaatgaattacaaggactcccaaatggatttcatattctttgtactatatacaaatgaagttggaagctctagac----atca |
212 |
Q |
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||||| ||||||||||| |||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||| | |||| |
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| T |
31497083 |
attttactactacaaatgaatgaattacaaagactcc-aaatggatttcatattctttgaactatatacaaatgaagtaggaagctctagtcttcaatca |
31497181 |
T |
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| Q |
213 |
aatttacaattcctgtgaaattggaacttgggtagaacttccaattccatgtatttagcaatatacttgttggttgcttcacttggatgcacactgtccc |
312 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||||||||| | || || |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31497182 |
aatttacaattcctatgaaattggaactttggtagaacttccaattctaaatactttgcaatatatttgttggttgcttcacttggatgcacactgtccc |
31497281 |
T |
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| Q |
313 |
aaaatacatattttgaagcatcatcacacacaggt |
347 |
Q |
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| T |
31497282 |
aaaatacatattttgaagcgtcatcacatacaggt |
31497316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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