View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13708_high_9 (Length: 330)
Name: NF13708_high_9
Description: NF13708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13708_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 37472150 - 37472474
Alignment:
| Q |
1 |
tactcctcagaggaacataaacgctacaggttcaaactgttcaaggacaactatcccattaagcctcctcacaaaaattacctttctctgaaatttctca |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37472150 |
tactcctaagaggaacataaacgctacaggttcaaactgttcaaggacaactatcccattaagcctcctcacaaaaattacctttctctgaaatttctca |
37472249 |
T |
|
| Q |
101 |
atgaaaatgctgctgatgatcacccaaatatggctcctctcttcccctagatatcaaagatgccattcataaatatggttttggcctcagcaagtac-tg |
199 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37472250 |
atgagaatgctgctgatgatcacccaa--atggcccctctcttcccctagatatcaaagatgccattcataaatatggttttggcctcagcaagtacacg |
37472347 |
T |
|
| Q |
200 |
tgcgacatctgggctcaacccgacaccatttatctgcacaacaatggaaaccctttaatagtgtaagactaatcacttccatcgtttctattcttgattt |
299 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37472348 |
tgcgacatctcggctcaacccggcaccatttatctgcacaaaaatggaaaccctttaata--gtaagactaatcacttccatcgtttctattcttgattt |
37472445 |
T |
|
| Q |
300 |
ctttttcatatcggtttgctttcatatct |
328 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
37472446 |
ctttttcatatcggtttgctttcatatct |
37472474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 33003866 - 33003759
Alignment:
| Q |
1 |
tactcctcagaggaacataaacgctacaggttcaaactgttcaaggacaactatcccattaagcctcctcacaaaaattacctttctctgaaatttctca |
100 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| || | |||| |
|
|
| T |
33003866 |
tactcttcagaggaacataaacgctataggttcaaactgttcaaggagaactatcccattaagcctcctcacaataactacctttctctacaaatgctca |
33003767 |
T |
|
| Q |
101 |
atgaaaat |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
33003766 |
atgaaaat |
33003759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 146
Target Start/End: Complemental strand, 40733746 - 40733608
Alignment:
| Q |
6 |
ctcagaggaacataaacgctacaggttcaaactgttcaaggacaactatcccattaagcctcctcacaaaaattacctttctctgaaatttctcaatgaa |
105 |
Q |
| |
|
|||||||||| | ||||||||||| |||||| | ||||||||||||||||| ||||| | || |||||| |||||||| |||| || ||||||||| |
|
|
| T |
40733746 |
ctcagaggaagagaaacgctacagcttcaaagtattcaaggacaactatccagttaaggcgccagacaaaagttacctttgtctggctttcctcaatgaa |
40733647 |
T |
|
| Q |
106 |
aatgctgctgatgatcacccaaatatggctcctctcttccc |
146 |
Q |
| |
|
||| |||| ||||||||| | |||||||||||| |||| |
|
|
| T |
40733646 |
tatggtgctattgatcacccca--atggctcctctcatccc |
40733608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University