View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13708_low_11 (Length: 378)
Name: NF13708_low_11
Description: NF13708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13708_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 1553633 - 1553990
Alignment:
| Q |
1 |
tattagcggttgaaaagcggcacaatcctgctactgtgccgttttgatggctgctgttgctatttaattagggggatttctcaaagaccttatacgtgtt |
100 |
Q |
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| T |
1553633 |
tattagcggttgaaaagcggcacaatcctgctactgtgccgttttgatggctgctgttgctattta----gggggatttctcaaagaccttatacgtgtt |
1553728 |
T |
|
| Q |
101 |
tttgagtatttatgtatgtttttggaatttatgattacttgtagcggtcattctctatctgctataccgctatagcatgtttgagcttcgacactatgtg |
200 |
Q |
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| T |
1553729 |
tttgagtatttatgtatgtttttggaatttatgattacttgtagcggtcattctctatctgctataccgctatggcatgtttgagcttcgacactatgtg |
1553828 |
T |
|
| Q |
201 |
ctactatctaagatttatgcaggagagttatatgattgatttatgtaatatatgttagagattcagtggtagtgtggataagcatatgattcaaaatttc |
300 |
Q |
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| T |
1553829 |
ctactatctgagatttatgcaagagagttatatgattgatttatgtaatatatgttagagattcagtggtagtgtggataagcatatgattcaaaatttc |
1553928 |
T |
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| Q |
301 |
atacattatttgtcgatctgcactaattaattaactactgaattttgtaaatatgtagatat |
362 |
Q |
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| T |
1553929 |
atacattatttgtcgatctgcactaattaattaaccactgaattttgtaaatatgtagatat |
1553990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 214 - 346
Target Start/End: Original strand, 1549722 - 1549854
Alignment:
| Q |
214 |
tttatgcaggagagttatatgattgatttatgtaatatatgttagagattcagtggtagtgtggataagcatatgattcaaaatttcatacattatttgt |
313 |
Q |
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| T |
1549722 |
tttatgcaagagagttttctgattgatttatgtactatatgtaagagattcagttgtagtgtggataagcgtatgatttgaaatttcatacatcgttgtt |
1549821 |
T |
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| Q |
314 |
cgatctgcactaattaattaactactgaatttt |
346 |
Q |
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| T |
1549822 |
cgaactgaactaattaattgaccactaaatttt |
1549854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 140
Target Start/End: Complemental strand, 33689620 - 33689577
Alignment:
| Q |
97 |
tgtttttgagtatttatgtatgtttttggaatttatgattactt |
140 |
Q |
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| T |
33689620 |
tgtttttgagtatttatgtatgttgttggaatttatgtttactt |
33689577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 6394887 - 6394928
Alignment:
| Q |
99 |
tttttgagtatttatgtatgtttttggaatttatgattactt |
140 |
Q |
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| T |
6394887 |
tttttgagtatttatgtatgttgttggaatttatgtttactt |
6394928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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