View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13708_low_16 (Length: 288)
Name: NF13708_low_16
Description: NF13708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13708_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 8 - 265
Target Start/End: Original strand, 31180228 - 31180486
Alignment:
| Q |
8 |
agaaatgaagaagctattccaagaaaa-agaaatgtcagggaggacaaaactataaaaatcctcaagacaaccatttcattacgaacaccataacgacag |
106 |
Q |
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| T |
31180228 |
agaaatgaagaagctattccaagaaaaaagaaatgtcagggaggacaaaactataaaaatcctcaagacaaccatttcattacgaacaccataacgacag |
31180327 |
T |
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| Q |
107 |
ttgtaaaatacaaatatcgaacctctgcaaatagactgcacaaagatagaggacttccgcagtgtagtatatgttttccgactaaaatgagttctagtat |
206 |
Q |
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| T |
31180328 |
ttgtaaaatacaaatatcgaacctctgcaaatagactgcacaaagatagaggacttccgcagtgtagtatatgttttccgactaaaatgagttctagtat |
31180427 |
T |
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| Q |
207 |
gcttttggataattgttgcagagttgctaagcatgtatgctctccgagcatccaattct |
265 |
Q |
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| T |
31180428 |
gcttttggataattgttgcagagttgctaagcatgtatgctctcagagcatccaattct |
31180486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 31 - 265
Target Start/End: Original strand, 31002776 - 31003012
Alignment:
| Q |
31 |
aaaaagaaatgtcagggaggacaaaactataaaaatcctcaagac--aaccatttcattacgaacaccataacgacagttgtaaaatacaaatatcgaac |
128 |
Q |
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| T |
31002776 |
aaaaagaaatgtcagggaggacaaaactataaaaatcctcatgatttaaccatttcaatacgaacaccataaggacagttgtaaaatacaaatatctaac |
31002875 |
T |
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| Q |
129 |
ctctgcaaatagactgcacaaagatagaggacttccgcagtgtagtatatgttttccgactaaaatgagttctagtatgcttttggataattgttgcaga |
228 |
Q |
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| T |
31002876 |
ctctgcaaatagactgcaaaaacaaagaggacttccgcagtgtagtatatcttttctgactaaaatgagttctagtatgcttttggataattgttgcaga |
31002975 |
T |
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| Q |
229 |
gttgctaagcatgtatgctctccgagcatccaattct |
265 |
Q |
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| T |
31002976 |
gttgctaagcatgtatgctctccgagcatccaattct |
31003012 |
T |
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