View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13708_low_20 (Length: 243)
Name: NF13708_low_20
Description: NF13708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13708_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 52584418 - 52584639
Alignment:
| Q |
12 |
gattattctcgtttgctgcaccaagtagatccatcaaatgtcttgtgtgactcatctcagaaccttgtgctagcccaatattgttagaaaatgttccaag |
111 |
Q |
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| T |
52584418 |
gattattctcgtttgctgcaccaagtagatccatcaaatgtcttgtgtgactcatctcagaaccttgtgctagcccaatattgttagaaaatgttccaag |
52584517 |
T |
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| Q |
112 |
tgattcatgatatgcattgttgtttctcaaagaagatgaaacataaccaccacctagtagttcttggttctcaaattgattttgatgggtcatggagttt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52584518 |
tgattcatgatatgcattgttgtttctcaaagaagatgaaacataaccaccacctagtagttcttggttctcaaattgattttgatgggtcatggagttt |
52584617 |
T |
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| Q |
212 |
gacatcattaattgtagctagc |
233 |
Q |
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|||||||||||||||||||||| |
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| T |
52584618 |
gacatcattaattgtagctagc |
52584639 |
T |
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