View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13708_low_3 (Length: 718)
Name: NF13708_low_3
Description: NF13708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13708_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 510; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 19 - 572
Target Start/End: Original strand, 30131612 - 30132164
Alignment:
| Q |
19 |
gattgtagcttgccaatggaacatgtcatcagcgacagggcctgcataaagtttaaaaacaaaaattattatactgactgaacagtcgaagtgtaattaa |
118 |
Q |
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| T |
30131612 |
gattgtagcttgccaatggaacatgtcatcagcgacagggcctgcataaagtttaaaaacaaaaattattatactgactgaacaatcgaagtgtaattaa |
30131711 |
T |
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| Q |
119 |
gacaagtatgaatcaaaagagaattattaaagaggtcctgctattactagcattgtgttatttattatttttaagcagtaatgaaaagcaatggactgca |
218 |
Q |
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| T |
30131712 |
gacaagtatgaatcaaaagagaattattaaagaggtcctacgattaccagcattgtgttatttattatttttaagcattaattaaaagcaatggactgca |
30131811 |
T |
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| Q |
219 |
tagttgaatgcataacacacatatattttagttttatctgatttacttctagttctagcagaaggcacccagttcactttatcttagtcttgtaaactta |
318 |
Q |
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| T |
30131812 |
tagttgaatgcataacacacatatattttagttttatctgatttacttctagttctagcagaaggcacccagttcactttatcttagtcttgtaaactta |
30131911 |
T |
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| Q |
319 |
aatcatttcatgtgggaactagaaacagacaaaattccaaagcaattaaataagtcattcatgaaaaactatgaaatcctgatactacaaacatgtggaa |
418 |
Q |
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| T |
30131912 |
aatcatttcatgtgggaactagaaacagacaaaattccaaagcaattaaataagtcattcatgaaaaactatgaaat-ctgacactacaaacatgtggaa |
30132010 |
T |
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| Q |
419 |
actagaaacagacaagattccaaagcattaaaataagtcgacaggtatgcatgagatacatctcgatagataagtattcagaaagtatcaaattttaaca |
518 |
Q |
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| T |
30132011 |
actagaaacagacaaaattccaaagcattaaaataagtcgacaggtatgcatgagatacatctcgatagataagtattcagaaagtatcaaattttaaca |
30132110 |
T |
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| Q |
519 |
acaaaagattcaacacaattttaagtgtgtttcattatttcatatatccccgcc |
572 |
Q |
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| T |
30132111 |
acaaaagattcaacacaattttaagtgtgtttcattatttcatacatccccgcc |
30132164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 625 - 701
Target Start/End: Original strand, 30132217 - 30132293
Alignment:
| Q |
625 |
ggagtcccagttcacgagccaggccttgtaatcgagcgtactgcagggccattttcgctcttgctgtgtgttctgtg |
701 |
Q |
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| T |
30132217 |
ggagtcccagttcacgagccaggccttgtaatcgagcgtactgcagggccattttcgctcttgctgtgtgttctgtg |
30132293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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