View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13708_low_4 (Length: 660)

Name: NF13708_low_4
Description: NF13708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13708_low_4
NF13708_low_4
[»] chr1 (17 HSPs)
chr1 (38-649)||(28239703-28240314)
chr1 (239-354)||(28232264-28232384)
chr1 (247-375)||(47569833-47569968)
chr1 (255-375)||(24621003-24621130)
chr1 (302-375)||(21158359-21158433)
chr1 (91-153)||(47569729-47569791)
chr1 (49-152)||(28232018-28232125)
chr1 (88-168)||(28326857-28326938)
chr1 (381-447)||(4745313-4745379)
chr1 (484-552)||(21158113-21158182)
chr1 (305-354)||(28327085-28327134)
chr1 (481-535)||(28232548-28232602)
chr1 (385-435)||(47570012-47570062)
chr1 (100-165)||(12541139-12541204)
chr1 (380-447)||(21158256-21158323)
chr1 (84-157)||(14508381-14508454)
chr1 (252-281)||(28327043-28327072)
[»] chr4 (2 HSPs)
chr4 (302-354)||(1637699-1637751)
chr4 (484-564)||(1637954-1638033)
[»] chr5 (1 HSPs)
chr5 (381-435)||(1062359-1062413)
[»] chr7 (1 HSPs)
chr7 (525-562)||(43163938-43163975)
[»] chr6 (1 HSPs)
chr6 (109-166)||(384136-384193)


Alignment Details
Target: chr1 (Bit Score: 564; Significance: 0; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 38 - 649
Target Start/End: Original strand, 28239703 - 28240314
Alignment:
Q  38 tctctctctcatgtgtaagatatatggcaacaaggatggcacaaaagaacttgtttgtgcaatgtagattacatgctttctagtttgctaatttaaggac 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28239703 tctctctctcatgtgtaagatatatggcaacaaggatggcacaaaagaacttgtttgtgcaatgtagattacatgctttctagtttgctaatttaaggac 28239802  T
Q  138 tttgtttttgcttttaattgcacttctattcattagctgattagtttcccagtgagtggacaataattgtgtttaatttatttttaataatgtcgggatg 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28239803 tttgtttttgcttttaattgcacttctattcattagctgattagtctcccagtgagtggacaataattgtgtttaatttatttttaataatgtctggatg 28239902  T
Q  238 tgataggagatactcatgtttcttgttttatgctctttgattatataaatatgcctatgattgtttgtgacattttcttgaaagcctgaatcaattatag 337  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28239903 tgataggagatactcatgtttcttgttttatgctctttgattatataaatatgcctatgattgtttgtgacattttcttgaaagtctgaatcaattatag 28240002  T
Q  338 cattgtagtctgcaatgagctgatacatttctcctatacatgctcaaaactgagatgagatgttcggtattttctcaattactttaggataatagtttta 437  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28240003 cattgtagtctgcaatgagcttatacatttctcctatacatgctcaaaactgagatgagatgttcagtattttctcaattactttaggataatagtttta 28240102  T
Q  438 gccatataatgctctccacaatattacgaaccttaattaggtgttcatgcattgaaatctggcgaggaacaaaaattacacttgacctatgtagcaccga 537  Q
    || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  28240103 gcaatataatgctctccacaatattacgaaccttaattgggtgttcatgcattgaaatctggcgaggaacaaaaattatacttgatctatgtagcaccga 28240202  T
Q  538 cacttcaagttgaaggcgtgtccaatgcctgacactgacatgtaattacatctaattactgctattttcacaatttataattggtgtttacgtgacagtg 637  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28240203 cacttcaagttgaaggcgtgtccaatgcctgacactcacaagtaattacatctaattactgctattttcacaatttataattggtgtttacgtgccagtg 28240302  T
Q  638 tcaatgcttcat 649  Q
    ||||||||||||    
T  28240303 tcaatgcttcat 28240314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 239 - 354
Target Start/End: Original strand, 28232264 - 28232384
Alignment:
Q  239 gataggagatactcatgtttcttgttttatgctctttgattatataaatatgcctatgattgt------ttgtgacattttcttgaaagcctgaatcaat 332  Q
    |||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||| ||||      ||||||||||||||||||||||||||||| |    
T  28232264 gataggaggtatccatgtttcttgttttatgctctttgattatataaatatgcctatg-ttgtctctccttgtgacattttcttgaaagcctgaatcagt 28232362  T
Q  333 tatagcattgtagtctgcaatg 354  Q
    ||||||||||||||||||||||    
T  28232363 tatagcattgtagtctgcaatg 28232384  T

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Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 247 - 375
Target Start/End: Original strand, 47569833 - 47569968
Alignment:
Q  247 atactcatgtttcttgttttatgctctttgattatataaatatgcctatgattgt------ttgtgacattttcttgaaagcctgaatcaattatagcat 340  Q
    |||| |||||||||| |||||||||||||||||||||||||| ||||||||||||      |||| ||||||||||||||||||||| || || ||||||    
T  47569833 atacgcatgtttcttattttatgctctttgattatataaatacgcctatgattgtcttggcttgttacattttcttgaaagcctgaaccatttttagcat 47569932  T
Q  341 tgtagtctgcaat-gagctgatacatttctcctata 375  Q
    |||||| |||||| ||| ||||||||||||||||||    
T  47569933 tgtagtttgcaatggagttgatacatttctcctata 47569968  T

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Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 255 - 375
Target Start/End: Complemental strand, 24621130 - 24621003
Alignment:
Q  255 gtttcttgttttatgctctttgattatataaatatgcctatgattgt------ttgtgacattttcttgaaagcctgaatcaattatagcattgtagtct 348  Q
    ||||||| |||||||||||||||||||| ||||| |||| |||||||      |||||||||||||||||||||||||||||||| ||||||| |||| |    
T  24621130 gtttcttattttatgctctttgattataaaaatacgcctttgattgtcttggcttgtgacattttcttgaaagcctgaatcaattttagcattctagttt 24621031  T
Q  349 gcaat-gagctgatacatttctcctata 375  Q
    ||||| ||| |||||| |||||| ||||    
T  24621030 gcaatggagttgatacgtttctcatata 24621003  T

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Target: chr1; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 302 - 375
Target Start/End: Complemental strand, 21158433 - 21158359
Alignment:
Q  302 ttgtgacattttcttgaaagcctgaatcaattatagcattgtagtctgcaat-gagctgatacatttctcctata 375  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||| || ||| ||||||||||||||||||    
T  21158433 ttgtgacattttcttgaaagcctgaatcaattatagcattgtcgtttgcgatggagttgatacatttctcctata 21158359  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 91 - 153
Target Start/End: Original strand, 47569729 - 47569791
Alignment:
Q  91 tttgtgcaatgtagattacatgctttctagtttgctaatttaaggactttgtttttgctttta 153  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  47569729 tttgtggaatgtagattacatgctttctagttttctaatttaaggactatgtttttgctttta 47569791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 49 - 152
Target Start/End: Original strand, 28232018 - 28232125
Alignment:
Q  49 tgtgtaagatatatggcaacaaggatggcacaaaagaacttgtttgtgcaatgta----gattacatgctttctagtttgctaatttaaggactttgttt 144  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||     |||| |||||||||||||| ||| || || |||  |||||    
T  28232018 tgtgtaagatatatggcaataaggatgtcacaaaagaacttgtttgtgaaatgtacattaattaaatgctttctagttttctagttaaatgaccatgttt 28232117  T
Q  145 ttgctttt 152  Q
    ||||||||    
T  28232118 ttgctttt 28232125  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 28326857 - 28326938
Alignment:
Q  88 ttgtttgtgcaatgtagattacatgctttct-agtttgctaatttaaggactttgtttttgcttttaattgcacttctattc 168  Q
    ||||||| | ||| ||||||||||||||| | |||||||||||| ||||||| || ||||||||||| ||||||||||||||    
T  28326857 ttgtttgcgaaatttagattacatgcttttttagtttgctaattaaaggactatgcttttgcttttagttgcacttctattc 28326938  T

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Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 381 - 447
Target Start/End: Original strand, 4745313 - 4745379
Alignment:
Q  381 tcaaaactgagatgagatgttcggtattttctcaattactttaggataatagttttagccatataat 447  Q
    |||||| ||||||||||||||| | |||||||| ||| ||| ||||||||||||| |||||||||||    
T  4745313 tcaaaattgagatgagatgttcagaattttctctatttcttaaggataatagtttcagccatataat 4745379  T

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Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 484 - 552
Target Start/End: Complemental strand, 21158182 - 21158113
Alignment:
Q  484 atgcattgaaatctggcgaggaacaaaaatt-acacttgacctatgtagcaccgacacttcaagttgaag 552  Q
    |||||||||||||||| |||||||| ||||| ||| |||||||||||| |||| ||||||||| ||||||    
T  21158182 atgcattgaaatctggtgaggaacacaaatttacatttgacctatgtaacaccaacacttcaaattgaag 21158113  T

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Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 305 - 354
Target Start/End: Original strand, 28327085 - 28327134
Alignment:
Q  305 tgacattttcttgaaagcctgaatcaattatagcattgtagtctgcaatg 354  Q
    ||||||||||||||||||||||||||||| ||||||||| || |||||||    
T  28327085 tgacattttcttgaaagcctgaatcaattctagcattgttgtttgcaatg 28327134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 535
Target Start/End: Original strand, 28232548 - 28232602
Alignment:
Q  481 ttcatgcattgaaatctggcgaggaacaaaaattacacttgacctatgtagcacc 535  Q
    |||||||||| ||||||||| |||||||||||||| | |||||||| ||||||||    
T  28232548 ttcatgcattaaaatctggcaaggaacaaaaattatatttgacctacgtagcacc 28232602  T

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Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 435
Target Start/End: Original strand, 47570012 - 47570062
Alignment:
Q  385 aactgagatgagatgttcggtattttctcaattactttaggataatagttt 435  Q
    |||||||||||||||||| | |||||||||||| ||||||||||| |||||    
T  47570012 aactgagatgagatgttcagaattttctcaatttctttaggataacagttt 47570062  T

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Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 165
Target Start/End: Original strand, 12541139 - 12541204
Alignment:
Q  100 tgtagattacatgctttctagtttgctaatttaaggactttgtttttgcttttaattgcacttcta 165  Q
    ||||||||||||||||||||||||  ||||||||||||  || || |||||||| || ||||||||    
T  12541139 tgtagattacatgctttctagttttttaatttaaggaccatgcttctgcttttactttcacttcta 12541204  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 380 - 447
Target Start/End: Complemental strand, 21158323 - 21158256
Alignment:
Q  380 ctcaaaactgagatgagatgttcggtattttctcaattactttaggataatagttttagccatataat 447  Q
    ||||||||||||||| ||| |||   |||||||||||| ||| ||||| ||||||| |||||||||||    
T  21158323 ctcaaaactgagatgggatcttcataattttctcaatttcttcaggattatagtttcagccatataat 21158256  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 157
Target Start/End: Complemental strand, 14508454 - 14508381
Alignment:
Q  84 gaacttgtttgtgcaatgtagattacatgctttctagtttgctaatttaaggactttgtttttgcttttaattg 157  Q
    ||||||||||||  |  |||| |||||||||||||| ||| |||||| ||||||| || |||||||||| ||||    
T  14508454 gaacttgtttgttgagagtagtttacatgctttctatttttctaattaaaggactatgcttttgcttttcattg 14508381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 281
Target Start/End: Original strand, 28327043 - 28327072
Alignment:
Q  252 catgtttcttgttttatgctctttgattat 281  Q
    ||||||||||||||||||||||||||||||    
T  28327043 catgtttcttgttttatgctctttgattat 28327072  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 302 - 354
Target Start/End: Original strand, 1637699 - 1637751
Alignment:
Q  302 ttgtgacattttcttgaaagcctgaatcaattatagcattgtagtctgcaatg 354  Q
    |||||||||||||||||||||||||||||||||||  ||||| || |||||||    
T  1637699 ttgtgacattttcttgaaagcctgaatcaattatataattgttgtttgcaatg 1637751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 484 - 564
Target Start/End: Original strand, 1637954 - 1638033
Alignment:
Q  484 atgcattgaaatctggcgaggaacaaaaattacacttgacctatgtagcaccgacacttcaagttgaaggcgtgtccaatg 564  Q
    |||||||||||||||| |||||||| |||||||| |||||||||  | ||||||||||| || |||||| ||| |||||||    
T  1637954 atgcattgaaatctgg-gaggaacacaaattacatttgacctataaaacaccgacactttaaattgaagacgtatccaatg 1638033  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 381 - 435
Target Start/End: Original strand, 1062359 - 1062413
Alignment:
Q  381 tcaaaactgagatgagatgttcggtattttctcaattactttaggataatagttt 435  Q
    |||| ||||| ||||||||||| | |||||||||||| ||||||||||| |||||    
T  1062359 tcaagactgaaatgagatgttcaggattttctcaatttctttaggataacagttt 1062413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 562
Target Start/End: Original strand, 43163938 - 43163975
Alignment:
Q  525 tatgtagcaccgacacttcaagttgaaggcgtgtccaa 562  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  43163938 tatgtagcaccgacacttcaagttgaagttgtgtccaa 43163975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 384193 - 384136
Alignment:
Q  109 catgctttctagtttgctaatttaaggactttgtttttgcttttaattgcacttctat 166  Q
    ||||||||||||||| |||||||| | ||| || || |||||||| ||||||||||||    
T  384193 catgctttctagttttctaatttatgcactatgcttctgcttttagttgcacttctat 384136  T

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