View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13708_low_5 (Length: 554)
Name: NF13708_low_5
Description: NF13708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13708_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 26 - 541
Target Start/End: Complemental strand, 9057004 - 9056484
Alignment:
| Q |
26 |
caacgtttaatttgacacttt-----acaatgccaaaacacaacatttgacttaaaacttggtgcaatggagtgaggaaggagcacaatacaactcccat |
120 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9057004 |
caacgtttaatttgacacttttttaaacaatgctaaaacacaacatttgacttaaaacttggtgcaatggagtgaggaaggagcacaatacaactcccat |
9056905 |
T |
|
| Q |
121 |
aaaccaaagtatctcgtcttttggaatttgcagttagcactaggacacatgttataagacaaatctttcgctctctgaatggttattgtcgtgtttgggg |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
9056904 |
aaaccaaagtatctcgtcttttggaatttgcggttagcactaggaaacatgttataagataaatctttcgctctctgaatagttattgtcgtgtttgtgg |
9056805 |
T |
|
| Q |
221 |
gctgtggactattgtaaattctttcatcaaacatgttgtcttaaacactctgtctttgcaaacctcatgtatggggagctatagaccgtcatacttaggg |
320 |
Q |
| |
|
| ||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9056804 |
gttgtcgactattgtaaattcttaaatcaaacatgttgtcttaaacactttgtctttgcaaacctcatgcatggggagctatagaccgtcatacttaggg |
9056705 |
T |
|
| Q |
321 |
caattactcggttactacttccaaaagcatattaaacccatcaccaaataagacaatccataatctgaatatacgactgcccataagaacgaggcacact |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9056704 |
caattactcggttactacttccaaaagcatattaaacccatcaccaaataagacaatccataatctgaatatacgattgcccataagaacgaggcacacg |
9056605 |
T |
|
| Q |
421 |
gatgttgactcagtcaatagagcactatcacaatgttagaaaaacaaggcaacgattatccgagacaactctacttgaccgggacacgactagtataaac |
520 |
Q |
| |
|
| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||| |
|
|
| T |
9056604 |
ggtgtttactcggtcaatagagcactatcacaatgttagaaaaacaaggcaacgattatccgagacaagtctacttgaccgggacacaacgagtataaac |
9056505 |
T |
|
| Q |
521 |
atcgacacaccacctctctct |
541 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
9056504 |
gtcgacacaccacctctctct |
9056484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University