View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13708_low_6 (Length: 547)
Name: NF13708_low_6
Description: NF13708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13708_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 13 - 531
Target Start/End: Original strand, 32704140 - 32704657
Alignment:
| Q |
13 |
atcatcatactcctcgtcacccactttaggaagtcaactgatgcaactatattttcgtaatcgactatctctggacaagttggaaaattagagacatttt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32704140 |
atcatcatactcctcgtcacccactttaggaagtcaactgatgcaactatatttttgtactcgactatctctggacaagttggaatattagagacatttt |
32704239 |
T |
|
| Q |
113 |
cact-attagttatgggtcat-atcacatagcattggtgtgtattaataatatttgtatggacatccattgtttcttaattagtcgtaattgactcatca |
210 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32704240 |
cacttattagttatgggtcatgatcacatagcattggtgt--attaataatatttgtatggacatccattgtttcttaattagtcgtgattgactcatct |
32704337 |
T |
|
| Q |
211 |
ggggtgacaacttctttgttggggaatacttaggtatcagctgggaatgcctcgtctaaatcctttaacacctctcatgcgattaaatatccttcccacc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||| |||||||||||| |
|
|
| T |
32704338 |
ggggtgacaacttctttgttggggaatacttaggtatcagctgggaatgactcgtctaaatccttcaacac--ctcatgcgattaaaaatccttcccacc |
32704435 |
T |
|
| Q |
311 |
ttggtcatggaccttaacaatcaacgacattgtttgttgtttctttaataagtaacacttcatttgttgcattcgttcatatgtcctagttatgcctatc |
410 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32704436 |
ttggtcatggaccttagcaatcaacgacattgtttgttgtttctttagtaagtaacacttcatttgttgcattcgttcatatgtcctagttatgcctatc |
32704535 |
T |
|
| Q |
411 |
gcc-ttgggttttgcttccatggccttctaatctctcatctcttgagatgaannnnnnngatggaccatgaactccaatgttgtctttgaccttgatctc |
509 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32704536 |
gcctttgggttttgcttccatggccttctaatctctcatctcttgagatgaatttttttgatggaccatgaactccaatgttgtctttgaccttgatctc |
32704635 |
T |
|
| Q |
510 |
taataaatccatgccttcttct |
531 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
32704636 |
taataaatccatgccttcttct |
32704657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University