View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13708_low_8 (Length: 446)
Name: NF13708_low_8
Description: NF13708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13708_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 6742254 - 6741916
Alignment:
| Q |
1 |
cacagagcaagatattggaacgaagcaaggaaatatagtgtgaatagttcaatattagatgcaataaaattactcaattaattaatgatagataaattat |
100 |
Q |
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| T |
6742254 |
cacaaagcaagttattggaacgaagcaaggaaatatagtgtgaatagttcaatattagatgcaataaaattactcaattaattaatgatagataaattat |
6742155 |
T |
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| Q |
101 |
gtgcattgtgaaagactagagtcatttgttcatgtttgatagatcccaaaaaataactgtaaaagttctgtttgtttcaacatct--ccaaagaactttt |
198 |
Q |
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| T |
6742154 |
gtgcattgtgaaagactagagtcatttgttcatgtttgatagatcccaaaaaataactgtaaaagttctgtttgtttcaacctctaaccaaagaactttt |
6742055 |
T |
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| Q |
199 |
taacttacacaagtgaatggggtgg--gagattgcagcaggctcctaccatgctgtggttacagtataacgaaatttatgaagtcccattctaccattag |
296 |
Q |
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| T |
6742054 |
taacttacacaagtgaatggggtgggagagattgcagctggctcctaccatgctgtggttacagtataacgaaatttataaagtcccattctaccattag |
6741955 |
T |
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| Q |
297 |
aactcgtgaccacaagccactaggatacaatatagcacc |
335 |
Q |
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| T |
6741954 |
aactcgtgaccacaagccactaggatacaatatagcacc |
6741916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 369 - 410
Target Start/End: Complemental strand, 6739657 - 6739616
Alignment:
| Q |
369 |
agccaatccaattatgatgcaatctaaccaggacacgttaat |
410 |
Q |
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| T |
6739657 |
agccaatccaattatgatgcaatctaaccaggacacgttaat |
6739616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 369
Target Start/End: Complemental strand, 6739819 - 6739780
Alignment:
| Q |
330 |
agcacccctatcttttatgagcaaaaattcactctttaaa |
369 |
Q |
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| T |
6739819 |
agcacccctatcttttatgagcaaaaattcactctttaaa |
6739780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 446
Target Start/End: Original strand, 21284404 - 21284442
Alignment:
| Q |
408 |
aattctttttaaagaaacattacctttaaactcagctgt |
446 |
Q |
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| T |
21284404 |
aattctttttaaagaaacattacttttaaactcagctgt |
21284442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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