View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13709_high_5 (Length: 395)
Name: NF13709_high_5
Description: NF13709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13709_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 15 - 346
Target Start/End: Complemental strand, 14566125 - 14565795
Alignment:
| Q |
15 |
gaagtggaatagttcatttgagttttctggaagctaggtctgaatcggaaacgatcagatgaggtttccagtataaaaacacaaaccgggagaggtaaat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14566125 |
gaagtggaatagttcatttgagttttctggaagctatgtctgaatcggaaacgatcagatgaggtttccggtataaaaacacaaaccgggagaggtaaat |
14566026 |
T |
|
| Q |
115 |
aatgttttccggtagaaaaacgcaaaccggaagagataaataatgatttccggaggaatcttccaaaccggaaaactaaaaaactgttttccaatatagc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
14566025 |
gatgttttccggtagaaaaacgcaaaccggaagagataaataatgatttccggaggaatcttccaaaccggaaagctaaaaaattgttttccaatatagc |
14565926 |
T |
|
| Q |
215 |
aattgatacttactctttcactctctctttagcaaaccagaaacgtttgaaaaaatttgtgagacagatgaaaaaatgaagtgttttaggtttacaaaca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| ||||| |
|
|
| T |
14565925 |
aattgatacttactctttcactctctctttagcaaaccagaaacgtttgaaaaattttgtgagacaaatgaaaaaatgaagtgttttaagtttataaaca |
14565826 |
T |
|
| Q |
315 |
aggctaaaaacgatagttcctgtcaaatattg |
346 |
Q |
| |
|
||| ||||| |||||||| |||||||||||| |
|
|
| T |
14565825 |
agg-taaaatagatagttcatgtcaaatattg |
14565795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University