View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13709_high_7 (Length: 290)
Name: NF13709_high_7
Description: NF13709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13709_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 10 - 272
Target Start/End: Original strand, 8246208 - 8246471
Alignment:
| Q |
10 |
aaatgaaagaattagaagctacactaaaactatttattttctttatatttaggtgtataagattaagcagttgctcaatttttaaaatgctactttcaat |
109 |
Q |
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| T |
8246208 |
aaatgaaagaattagaagctacactaaaactatttattttctttatatttaggtgtataagattaagcagttgctcaatttttaaaatgctactttcaat |
8246307 |
T |
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| Q |
110 |
ttagaattttttaaagggattgtagttttatacccaatca-nnnnnnnngaataatttttatatatatgccccaccaggtattgtaatttttatacccaa |
208 |
Q |
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| T |
8246308 |
ttagaattttttaaagggattgtagttttatacccaatcatttttttttaaataatttttatatatatgccccaccagggattgtaatttttatacccaa |
8246407 |
T |
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| Q |
209 |
tcatgaagagacnnnnnnnntaaatgtgaaaagacaagagataaggtatcatgccccacggtat |
272 |
Q |
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| T |
8246408 |
tcatgaagagacaaaaaaaataaatgtgaaaagacaagagataaggtatcatgccccacggtat |
8246471 |
T |
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