View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13709_low_1 (Length: 971)
Name: NF13709_low_1
Description: NF13709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13709_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 475; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Complemental strand, 47385936 - 47385438
Alignment:
| Q |
1 |
atcatcatcatcatcaacatcctcttcttcttccgggtcaaaacttgtagtctcatttgtcaaaaaacagagacgaagacggccatggcttctatcagct |
100 |
Q |
| |
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|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47385936 |
atcatcatcaacatcaacatcctcttcttgttccgggtcaaaacttgtagtctcatttgtcaaaaaacagagacgaagacggccatggcttctatcagct |
47385837 |
T |
|
| Q |
101 |
tgaaaacatgaggtacttggtgggacctttgtgacttcaattactaacctaccatcttcacggtggggtctaacacgaagagattctgatcctctcatcg |
200 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47385836 |
tgaaaacatgatgtacttggtgggacctttgtgacttcaattactaacctaccatcttcacggtggggtctaacacgaagagattctgatcctctcatcg |
47385737 |
T |
|
| Q |
201 |
ttgtcaaaggtggtggaaaattatggatttttggtttcttagtagctattaatactggactacaaggttctctttgctcctccattgctcccattgaaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47385736 |
ttgtcaaaggtggtggaaaattatggatttttggtttcttagtagctattaatactggactacaaggttctctttgctcctccattgctcccattgaaga |
47385637 |
T |
|
| Q |
301 |
caacaacatgtcattttctacaatgtcagtgccactctcattaccaagattctccgtacataattcaaggctctttggactcatagccaaagatgaacgt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47385636 |
caacaacatgtcattttctacaatgtcagtgccactttcattaccaagattctccgtacataattcaaggctctttggactcatagccaaagaggaacgt |
47385537 |
T |
|
| Q |
401 |
ttctgttgaggatgcacataggtggttgttgtggtttcttttttccatgtgttttgatatatattatttgaaagagcatcaaggaaattccaaccacca |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47385536 |
ttctgttgaggatgcacataggtggttgttgtggtttcttttttccatgtgttttgatatatattatttgaaagaccatcaaggaaattccaaccacca |
47385438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 577 - 955
Target Start/End: Complemental strand, 47385360 - 47384982
Alignment:
| Q |
577 |
atcaaagaaacaagttttgaaggctaaatcaatggattgaggagtagggacttgttttggagaaggtaaccttaaccttagtgttcttgactcaacaaga |
676 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47385360 |
atcaaagaaacaagttttgaaggctaaatcaatggattgaggagtagggacttgttttggagaaggtaaccttaaccttagtgttcttgactcaacaaga |
47385261 |
T |
|
| Q |
677 |
ggagactcaagatgtgtttgcaatccaggatggtatacaactgcagacatgattgatgtttgtgtcttaaatactaggatgtttccaatttcaaattaag |
776 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
47385260 |
ggagactcaagatgtgtttgcaatccaggatggtatacgactgcagacatgattgatgtttgtgtcttaaatactaggatgtttcaaatttcaaattaag |
47385161 |
T |
|
| Q |
777 |
gtgataaagctgagtgtgaagtttgttatgagcttgttttttcggattggaagcaagtggttttagttttaggtatgaagagaggaatataattgaaaga |
876 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47385160 |
gtgataaagctgagtgtgaagtttgttatgagtttgttttttcggattggaagcaagtggttttagttttaggtatgaagagaggaatataattgaaaga |
47385061 |
T |
|
| Q |
877 |
aggaatgggaatggtgtgtggaagaagtgaagggggtgggggtgaatttgtagtcctaaaaagtgttttgggaaaaagg |
955 |
Q |
| |
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| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47385060 |
aagaatgggaatggtgtgtggaagaagtgaaaggggtgggggtgaatttgtagtcctaaaaagtgttttgggaaaaagg |
47384982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 25 - 499
Target Start/End: Original strand, 47373020 - 47373491
Alignment:
| Q |
25 |
ttcttcttccgggtcaaaacttgtagtctcatttgtcaaaaaacagagacgaagacggccatggcttctatcagcttgaaaacatgaggtacttggtggg |
124 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| || || |||||||||||| |
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| T |
47373020 |
ttcttcttccgggtcaaaacttgtagtctcatttgtcaaaaaatagagacgaagacagccatggcttctatcagcttgaaagcaagaagtacttggtggg |
47373119 |
T |
|
| Q |
125 |
acctttgtgacttcaattactaacctaccatcttcacggtggggtctaacacgaagagattctgatcctctcatcgttgtcaaaggtggtggaaaattat |
224 |
Q |
| |
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||||| ||||||||||| || ||||| |||||| ||||||||| ||||||| ||| ||||||||||||||| || ||||||||||||||||||||||| | |
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| T |
47373120 |
accttagtgacttcaatcaccaaccttccatctccacggtgggttctaacatgaaaagattctgatcctcttatggttgtcaaaggtggtggaaaattct |
47373219 |
T |
|
| Q |
225 |
ggatttttggtttcttagtagctattaatactggactacaaggttctctttgctcctccattgctcccattgaagacaacaacatgtcattttctacaat |
324 |
Q |
| |
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| |||| ||||||||||||| ||| ||| || |||||||| |||||| |||||||| |||||||||||||||||| | ||| ||||||||||| |
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| T |
47373220 |
gagttttcactttcttagtagctgctaaaacttgagaacaaggttgtctttg---ctccattgttcccattgaagacaacaataagtcgttttctacaat |
47373316 |
T |
|
| Q |
325 |
gtcagtgccactctcattaccaagattctccgtacataattcaaggctctttggactcatagccaaagatgaacgtttctgttgaggatgcacataggtg |
424 |
Q |
| |
|
|||||| |||||||| || |||||||| || || || |||||||| ||||||||||||| | ||||||| |||| ||||| ||||| | | ||||||| |
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| T |
47373317 |
gtcagtaccactctcgttgccaagattttctgtgcacaattcaagactctttggactcagaaccaaagaggaacacttctgctgagggggaagataggtg |
47373416 |
T |
|
| Q |
425 |
gttgttgtggtttcttttttccatgtgttttgatatatattatttgaaagagcatcaaggaaattccaaccacca |
499 |
Q |
| |
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| |||||||||||||||||| ||||||||||| ||||||||| |||||||| |||||||| |||||||||||| |
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| T |
47373417 |
gctgttgtggtttctttttttgatgtgttttgagctatattattggaaagagcgtcaaggaagttccaaccacca |
47373491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 577 - 780
Target Start/End: Original strand, 47373566 - 47373763
Alignment:
| Q |
577 |
atcaaagaaacaagttttgaaggctaaatcaatggattgaggagtagggacttgttttggagaaggtaaccttaaccttagtgttcttgactcaacaaga |
676 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||| ||| |
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| T |
47373566 |
atcaaacaaacaagatttgaaggctaaatcaacagattgaggagtagggacttgttttggagaaggtagtcttaaccttactgttcttgattcaacgaga |
47373665 |
T |
|
| Q |
677 |
ggagactcaagatgtgtttgcaatccaggatggtatacaactgcagacatgattgatgtttgtgtcttaaatactaggatgtttccaatttcaaattaag |
776 |
Q |
| |
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|||| ||||| |||| ||||||||||| ||||| |||| ||| | |||| |||||||||||| |||||||||||||| |||||||||||| | |
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|
| T |
47373666 |
tgagattcaaggtgtgactgcaatccagggtggtagacaattgctgccatg------ttttgtgtcttaagtactaggatgtttcaaatttcaaattatg |
47373759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 870 - 939
Target Start/End: Original strand, 47373804 - 47373870
Alignment:
| Q |
870 |
tgaaagaaggaatgggaatggtgtgtggaagaagtgaagggggtgggggtgaatttgtagtcctaaaaag |
939 |
Q |
| |
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||||||||| |||||||||| |||||||||||||||||| | ||||||||||||||||| |||||| |
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| T |
47373804 |
tgaaagaagtaatgggaatgatgtgtggaagaagtgaagtg---aagggtgaatttgtagtcccaaaaag |
47373870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 3e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 91 - 162
Target Start/End: Complemental strand, 20976673 - 20976602
Alignment:
| Q |
91 |
tctatcagcttgaaaacatgaggtacttggtgggacctttgtgacttcaattactaacctaccatcttcacg |
162 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||| | ||||| ||||||||||| |
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| T |
20976673 |
tctatcagcttgaaaacatgaggtacttggtgggaccttttttacttcaattgccaaccttccatcttcacg |
20976602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 584 - 630
Target Start/End: Complemental strand, 20976520 - 20976474
Alignment:
| Q |
584 |
aaacaagttttgaaggctaaatcaatggattgaggagtagggacttg |
630 |
Q |
| |
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||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
20976520 |
aaacatgttttgaaggctaaatcaatggattgagaagtagggacttg |
20976474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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